Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01168 ATGTCTACTTACAGTAGCCCTATTGCATCAGGACCTTCAGTATCACAACCAAACGCTGCATTAAAGTCTGAGCAATCAACACCTGCTCTTACTCTTCCCATTCATCACCATCCAAACTTGTTTCCAACTTCTCAGCCCAAATCTCAAACTGGTTATGCTAGAAGTGGCATTAAAGTTTTCAAGAAGGGGATGCCAATTGCTAGGTCAGTGAACCTTACACAATTACGTGGTTACGATGAATTGATTCATAAATTGGATCAGTTATTTGAATTTGGAGGTCAATTGATTTCTTCACAAAAGAATTGGCTTATTGCCTACACTGATTATGAAGAAGATATAATGCTTGTTGGTGATGATCCATGGGAGGAATTTGTTGTAATGGCCCGTAAAATTTATATCTACCCCAAAGACGACTTTCAGAAAATGATGTATGATGAAAGATCAATTAAAGAAATTCATAAGCAGGAGAATGAAAACTTTTACAAGGAATTCCATGGTCACATACACAAGAATGATGAAAGATTGCCTGAAGGATCAGATAATGAAATGCAGAATCAGAAGAATGACACTTTATATAGTGGTGGAGCTAGAGGAGAAATTTTGAATCCATTTGGGAAAGCCATGCTTCTGAAATCAAGTATAGAGTTTCTTAGCTCGTATGAGAGGGAAGTAATCAAGAATAAAGTTTCCTAA 693 0.368 MSTYSSPIASGPSVSQPNAALKSEQSTPALTLPIHHHPNLFPTSQPKSQTGYARSGIKVFKKGMPIARSVNLTQLRGYDELIHKLDQLFEFGGQLISSQKNWLIAYTDYEEDIMLVGDDPWEEFVVMARKIYIYPKDDFQKMMYDERSIKEIHKQENENFYKEFHGHIHKNDERLPEGSDNEMQNQKNDTLYSGGARGEILNPFGKAMLLKSSIEFLSSYEREVIKNKVS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01168 230 MobiDBLite consensus disorder prediction 171 191 - -
Cca05g01168 230 ProSiteProfiles PB1 domain profile. 54 136 IPR000270 GO:0005515
Cca05g01168 230 Pfam AUX/IAA family 95 134 IPR033389 -
Cca05g01168 230 PANTHER AUXIN RESPONSE FACTOR 2 34 151 - -
Cca05g01168 230 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 151 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca05g01168 230 MobiDBLite consensus disorder prediction 1 22 - -
Cca05g01168 230 Gene3D - 50 143 - -
Cca05g01168 230 SUPERFAMILY CAD & PB1 domains 56 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01168 Cca-Chr5 29190784 29192616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01168 47 142 B3 DNA Binding Superfamily AT5G62000 52.083 2.69e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca05g01168 AUX_IAA 1.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01168 - - ccaj:109795197 395.201