Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01167 ATGTCTACTTACAGTAGCCCTATTGCATCAGGACCTTCAGTATCACAACCAAACGCTGCATTAAAGTCTGAGCAATCAACACCTGCTCTTACTCTTCCCATTCATCACCATCCAAACTTGTTTCCAACTTCTCAGCCCAAATCTCAAACTGGTTATGCTAGAAGTGGCATTAAAGTTTTCAAGAAGGGGATGCCAATTGCTAGGTCAGTGAACCTTACACAATTACGTGGTTACGATGAATTGATTCATAAATTGGATCAGTTATTTGAATTTGGAGGTCAATTGATTTCTTCACAAAAGAATTGGCTTATTGCCTACACTGATTATGAAGAAGATATAATGCTTGTTGGTGATGATCCATGGGAGTATGATGAAAGATCAATTAAAGAAATTCATAAGCAGGAGAATGAAAACTTTTACAAGGAATTCCATGGTCACATACACAAGAATGATGAAAGATTGCCTGAAGGATCAGATAATGAAATGCAGAATCAGAAGAATGACACTTTATGTAAGCAATTTCGAGGAAAACAGAAGATAATTGATTCTGAAAGCTCATGGCCCTTATTAACTTCAAGTACTGACAGAAACACTAATACAACATTGTCAAATTCACACGATTATTCCGGTCCCTCGTAA 639 0.3693 MSTYSSPIASGPSVSQPNAALKSEQSTPALTLPIHHHPNLFPTSQPKSQTGYARSGIKVFKKGMPIARSVNLTQLRGYDELIHKLDQLFEFGGQLISSQKNWLIAYTDYEEDIMLVGDDPWEYDERSIKEIHKQENENFYKEFHGHIHKNDERLPEGSDNEMQNQKNDTLCKQFRGKQKIIDSESSWPLLTSSTDRNTNTTLSNSHDYSGPS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01167 212 ProSiteProfiles PB1 domain profile. 54 136 IPR000270 GO:0005515
Cca05g01167 212 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 153 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca05g01167 212 PANTHER AUXIN RESPONSE FACTOR 2 34 153 - -
Cca05g01167 212 SUPERFAMILY CAD & PB1 domains 56 131 - -
Cca05g01167 212 MobiDBLite consensus disorder prediction 186 212 - -
Cca05g01167 212 MobiDBLite consensus disorder prediction 1 22 - -
Cca05g01167 212 Gene3D - 50 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01167 Cca-Chr5 29179796 29181424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01167 47 159 B3 DNA Binding Superfamily AT5G62000 41.379 4.27e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01167 - - ccaj:109795197 426.787