Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01162 ATGGAGCTCCACCATGATAATGATTTCTTGGAAGAATTTATGACTCTAAAACCATGGGATACCAATCCATGTTCACAAGAAAACGAGCTTTTCTCTAGTGGCTGGAGTTTTGATTATTGTTTTGATCAAAACTCTCATCATGCTTTTGCTCCAAATTCTTTATCTTGCCAAGAAGTTCCTCAAAGTTACAACAACGACTACTACACCTTCAATGAAATCTATAGTTCCTTACTTGATGAGTTTTCTGCACCACAAATTATAGATTCATCATCTTACAATACCCTTGATACTCCAACCCCTCCATTTCTGGCTCAAGAAGATTATCCGTTGTCCATGATGGAAGAAGAAGATCCGGGTTTGCTAGGGGAAGAGCTTCATTGTTTGGACCTTCAAACCACATGCAAAATGGAGCCAAACCATTCCCCTGAAATGCCAGTTTTCAACACAGATTCATGTGTGGAAAGAAAGGATAATAGGGAAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGGAGAAGAAGAAAGAGACTGAATGATAGGCTCTCCATGCTAAGATCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGACACTATTGATTATATGAAAGAGCTCTTGGAAAAGATTAACGATTTGAAACAAGAAATAGAAGTAGATTCCAACATGGCTGATATTTTCAAGGATTTAAAGTCAAAGGAAATCTTTCTGAGAAATTCCCCCAAGTTTGATGTGGAGAGGAGAAATGTCAACACAAGGGTAGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGTTGTCTACAGTTAACACCTTGGAAACGTTAGGCCTTGAGATCCAACAATGCGTTATTAGCTGTTTCAATGATTTCACGGTGCAAGCTTCTTGCTCAGAGGAAGTGAAGCATGACACAGTTATGAGTTGCGAAGATATAAAGCAAGCACTATTCAGAAGCGCAGGATATGGAGGAAGATGTTTATGA 1005 0.4 MELHHDNDFLEEFMTLKPWDTNPCSQENELFSSGWSFDYCFDQNSHHAFAPNSLSCQEVPQSYNNDYYTFNEIYSSLLDEFSAPQIIDSSSYNTLDTPTPPFLAQEDYPLSMMEEEDPGLLGEELHCLDLQTTCKMEPNHSPEMPVFNTDSCVERKDNREKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINDLKQEIEVDSNMADIFKDLKSKEIFLRNSPKFDVERRNVNTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEEVKHDTVMSCEDIKQALFRSAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01162 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Cca05g01162 334 SMART finulus 171 220 IPR011598 GO:0046983
Cca05g01162 334 Gene3D - 154 230 IPR036638 GO:0046983
Cca05g01162 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 334 - -
Cca05g01162 334 CDD ACT_UUR-ACR-like 260 323 - -
Cca05g01162 334 Pfam Helix-loop-helix DNA-binding domain 171 214 IPR011598 GO:0046983
Cca05g01162 334 Coils Coil 204 231 - -
Cca05g01162 334 PANTHER DNA BINDING PROTEIN 5 334 - -
Cca05g01162 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01162 Cca-Chr5 29048234 29050397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01162 57 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 47.667 4.38e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g01162 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01162 - - gmx:100814388 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01162 05 29048234 29050397 Cca05g01162 05 29048234 29050397 ECH