Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01159 ATGTGCAGCTACGGCGGCCGCATCCAGCCCCGCCCTCACGACAACCACCTCACCTACGTCGGCGGCGACACCAAGATCCTCTCCGTCGACCGCCACGTCAAGTTCCCCGCCCTCCTCGCCAAGCTCTCCTCCCTCGCCAACGCCCCCTCCCTCCTCAAGTACCAGCTCCCCGGCGAAGACCTCGACGCCCTCATCTCCGTCACCAACGACGACGACCTCCACCACATGATGCTCGAATACGAccgcctccaccaccgctcctccccgcgccccgcccgcctccgcctcttcctcttccctctccactcctcctccaccgccgccgccgcattctccgccgcGGACTCCAACCCCGACCGACAGTGGTTCGTCGACGCTCTCAACTCCGTCCAGCTTCCTCTCCTGGAAGGCTCCTcgccgccgccgccgccgccgAATCCCGATTTCCTCTTCGGATTGGACAAGCCGACGCCGGAGGACGCTCCGCCGAAGGAGAATTCAACTGCGGAGTTCGAAGAGAATCGCCAAGCGGTTAGAGAAACCCTACCCGAACCCGAACCCGAGATTAGGAACTTGCAAATCGGGAACAATAATAACGAGCAGCGGAAAATAAATAACGAGGAGAGCGCTAACGGCAGGGCTTACGGCGTTAACCAAAAGAACGCGGAGAGCGTGACGCCGTTAGTGGCGCATTCGCACGCGCAAGTGGTGCATCCCGGAACGGTGTCGTTTCTGCAAGACAGGAATAACGGGGGTTATTCGCTGGCCATGCCCACCTCGGGGAACGAGATTTATCTCATTCAGACGCCTTCTGGAATGTTCCAAGCAGTGCGGCCTGTTACCGGACCGGTGGGTCAACCGGTTTATTTTGTCCACGCGCCCGGTTCAGTTCGTTACAGTGGTTCCGAGGCTGCATCGGCGCCGGAGCACGGGTTCTCGGCGGCGGGTCGCGGCGGCGCGCGGTGGTGA 969 0.5284 MCSYGGRIQPRPHDNHLTYVGGDTKILSVDRHVKFPALLAKLSSLANAPSLLKYQLPGEDLDALISVTNDDDLHHMMLEYDRLHHRSSPRPARLRLFLFPLHSSSTAAAAFSAADSNPDRQWFVDALNSVQLPLLEGSSPPPPPPNPDFLFGLDKPTPEDAPPKENSTAEFEENRQAVRETLPEPEPEIRNLQIGNNNNEQRKINNEESANGRAYGVNQKNAESVTPLVAHSHAQVVHPGTVSFLQDRNNGGYSLAMPTSGNEIYLIQTPSGMFQAVRPVTGPVGQPVYFVHAPGSVRYSGSEAASAPEHGFSAAGRGGARW 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01159 322 Pfam PB1 domain 14 100 IPR000270 GO:0005515
Cca05g01159 322 Gene3D - 18 100 - -
Cca05g01159 322 MobiDBLite consensus disorder prediction 158 174 - -
Cca05g01159 322 MobiDBLite consensus disorder prediction 136 151 - -
Cca05g01159 322 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 308 - -
Cca05g01159 322 MobiDBLite consensus disorder prediction 300 322 - -
Cca05g01159 322 SUPERFAMILY CAD & PB1 domains 13 106 - -
Cca05g01159 322 SMART PB1_new 12 101 IPR000270 GO:0005515
Cca05g01159 322 CDD PB1_UP2 1 99 - -
Cca05g01159 322 MobiDBLite consensus disorder prediction 134 174 - -
Cca05g01159 322 PANTHER OS05G0427100 PROTEIN-RELATED 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01159 Cca-Chr5 28991901 28992869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01159 1 138 MAP Kinase Kinase Kinase AT5G57610 43.478 3.56e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01159 - - ccaj:109819151 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01159 05 28991901 28992869 Cca05g01159 05 28991901 28992869 ECH