Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01157 ATGGTGTTGAGGAAAGTGGGAAAGTATGAGATTGGAAGGACCGTTGGAGAGGGAACCTTTGCGAAGGTTAAGTTCGCTCAGAACACAGAAACTGGTGAGAGTGTCGCCATGAAGGTGCTCGACCGTAGCACCATCATCAAGCACAAAATGATCGACCAGATCAAGAGGGAAATTTCTATTATGAAGCTAGTCAGACATCCATATGTTGTTCGTCTGCACGAGGTTCTAGCAAGCCGTACTAAGATTTATATCATATTGGAGTTTATTACGGGTGGTGAATTGTTTGATAAAATTGTAAACCATGGGCGTCTTAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGGGTAGATTATTGCCACAGTAAAGGAGTTTATCATAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTTCCAGAACAGGGGATCAGTATGCTTCGCACAACTTGTGGGACTCCTAATTATGTAGCTCCCGAGGTAATCAGTCACAAGGGTTACAATGGTGCTCCAGCAGATGTTTGGTCCTGTGGAGTTATCCTCTACGTTCTAATGGCTGGATATCTTCCCTTTGACGAACTTGATCTAACTACGTTGTACAGTAAGATTGAGAAAGCACAGTTTTCGTGCCCTTCTTGGTTTCCTGTGGGAGCAAAGTCTTTAATACACAGAATTTTGGACCCAAATCCTGAACATCGTATAACCATTCAGCAGATAAGGAATGATGAGTGGTTTCAAAAGGGATACATTCCAGTCAGTCTCCTCGAGTATGAAGATATAAATCTGGATGATGTAAATGCCGCATTTGACAATGTTGAGGATCAGAGGACTAATCACCAATGTGAGAATGACGACATGGGTCCTCTAACTCTTAATGCATTCGACATGATAATTTTATCTCAGGGCTTAAACCTTGCAACCTTATTTGATCGTGGACAGGACACTATGAAATACCAAACACGCTTCATCAGTCAAAAGCCACCAAAGGTGGTTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACCCATATTCGCAACTATAAGATGAGAATAGAGGGTATTTCTGCAAATAAGACTTCTCATTTCTCAGTTATACTGGAAGTTTTTGAAATTGCTCCTACATTTTACATGGTGGACATTCAAAAAGCAGCTGGAGATGCAGGTGAATATCAAAAGTTTTACAATAATTTTTCTAGCAATCTCGAGGATATCATGTGGAAACCATCCAATGAAACAAGCAAATTAAGGAAGTCCAAGACTAAATGA 1329 0.398 MVLRKVGKYEIGRTVGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMIDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVNHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSAFPEQGISMLRTTCGTPNYVAPEVISHKGYNGAPADVWSCGVILYVLMAGYLPFDELDLTTLYSKIEKAQFSCPSWFPVGAKSLIHRILDPNPEHRITIQQIRNDEWFQKGYIPVSLLEYEDINLDDVNAAFDNVEDQRTNHQCENDDMGPLTLNAFDMIILSQGLNLATLFDRGQDTMKYQTRFISQKPPKVVLSSMEVVAQSMGFKTHIRNYKMRIEGISANKTSHFSVILEVFEIAPTFYMVDIQKAAGDAGEYQKFYNNFSSNLEDIMWKPSNETSKLRKSKTK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01157 442 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01157 442 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01157 442 PANTHER - 2 441 - -
Cca05g01157 442 Gene3D Transferase(Phosphotransferase) domain 1 89 269 - -
Cca05g01157 442 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Cca05g01157 442 Gene3D Kinase associated domain 1, KA1 302 428 - -
Cca05g01157 442 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Cca05g01157 442 CDD CIPK_C 309 424 - -
Cca05g01157 442 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01157 442 Coils Coil 279 299 - -
Cca05g01157 442 Pfam NAF domain 305 363 IPR004041 GO:0007165
Cca05g01157 442 SUPERFAMILY Protein kinase-like (PK-like) 6 277 IPR011009 -
Cca05g01157 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cca05g01157 442 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Cca05g01157 442 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01157 Cca-Chr5 28966474 28973208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01157 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 82.732 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca05g01157 Pkinase 8.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01157 - - gmx:100816735 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01157 05 28966474 28973208 Cca05g01157 05 28966474 28973208 ECH