Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01151 atggggagaggaaagatcgtgataaggaggatcgacaattcgacgagtaggcaagtgacgttctcgaagcgaaggaacggtttgctgaagaaggcgaaggagcttgcgatcttgtgtgatgctgaagtaggagttatgatcttctccagcactggcaaactctacgatttcgctagttccAGCATGAAGTCAATAATTGACCGATACAACAAATCAAAAGAAGAACATTGTCAACTCGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAGCAATTACACAATTTGCAAGAAAGTCATCGCAGGAAAATGATGGGGGAAGAACTGTCAAACCTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTCCGTGGTGTCCGTATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAACTTAATCAAAAGGGAAGCCTCATTCACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGAAAGTGAAACAAACAGAAATTCTGTTCTCACAAATGGTCTAAGCATAGGAGAGGATTTGCGAGTGCCTGTGAATCTCCAGCTAAGTCAGCCACAACAACAACCCTACAAGGCACCTTCAGGAAGTACAAAATTGGGCAGACTGCAATTGCAATGA 726 0.2906 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSIIDRYNKSKEEHCQLGSSASEIKFWQREAAMLRQQLHNLQESHRRKMMGEELSNLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQELNQKGSLIHQENVELYKKVNLICQENMELKKKVYGTKDESETNRNSVLTNGLSIGEDLRVPVNLQLSQPQQQPYKAPSGSTKLGRLQLQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01151 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cca05g01151 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cca05g01151 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Cca05g01151 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Cca05g01151 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 239 - -
Cca05g01151 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca05g01151 241 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca05g01151 241 Coils Coil 86 106 - -
Cca05g01151 241 MobiDBLite consensus disorder prediction 220 241 - -
Cca05g01151 241 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01151 Cca-Chr5 28893493 28917446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01151 1 232 MADS-box Gene Family AT2G22630 59.664 5.47e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca05g01151 K-box 6.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01151 K09264 - gmx:100812413 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01151 05 28893493 28917446 Cca05g01151 05 28893493 28917446 ECH