Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01149 ATGGCCTCACAAGGAGTGCAATTGCGCATCGAAGACACTCAAGTAGTTATGGACAATGGCACAGTGCAAGTGTATTTATCGAATCCAGGTGGATTTGTTACTAGAATACAATATAATGGCACTGATAATCTGCTTGAAGTTCTAAGCGAAAGTGATGATATAGGGTATTGGGACGTTGTTTGGAGTGAAGCCGGAAGTACAGGAACAACTGGGACATTTGAAAAGATTGTGGGAACGAGTTTCAGTGTTATAACGGAAAATGAAGAACAAGTTGAAATCTGTTTCACAAGTAAGTGGGATCCATCTCTGAAAGGAAAGCGAGCACCTCTAAATATTGACAAAAGGTATGTGATGCTTCGTAATTCCTCGGGATTCTATTCCTACGCCATCTTTGAACATCTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATCGTTTACAAGCTTCGTAAAGACAAGTTTCATTTCATGACGGTGTCGGATAACAGACAAAGATTTATGCCTCTCCCAGAAGATAGATCGCCCGAAAGAGGAAAAGCACTAGTTCCCCCGGAAGCAGTATTGCTTGTGGATCCTGTGGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACTCGAATGAGAACAAAGATCTTAAGGTTCATGGGTGGATAAGTTCCCAATCCGAAGCAGATCCAGCCATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCAGTTAAACAAAACCTTACTTCCCACGTTGGCCCATATTGCCTCGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAATGAACCGTGGAAGAAAGTTTTTGGGCCAATTTTCGTTTATCTCAACACTTTGTTAGATGCTGATGACCCACTGGAGCTCTGGGAGGACGCCAACCATCAGATGGAGGAGGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAAAGACTAGCCAACGGGGCAGTGTTTGTGGCATATTACTAGTTCGAGACAGGTGTCTAAGTGATGAGTACATAATAGCACGAGACGCATATGTGGGAGTGGCACCACCAGGAGAAGCTGGATCGTGGCAAAGAGAATGCAAGGGATACCAGTTTTGGAGTAGAACAAACGAAGAAGGGTACTTCTCAATCAACAATATACGCAGTGGAGATTACAATCTCTATGCATGGGTTCCAGGTTTCATTGGAGACTATTGGAACAATGCTGTCCTCACCATAACCCCAGGTTGTGAAATAGATGCTGGTGACATTATTTATGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATAGGGATTCCTGATCGCTCTGCTAATGGATTCTATGTTCCTGATCCTAATCCCAACTTCATAAACAAGCTTTTTGTCAACCACCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAATTATACCCAAATGAGGATTTAATTTATACAGTGGGTGCCAGTGACTACACAAAAGATTGGTTCTTTGCACAAGTCACAAGGAAGCAAGAAGATGGCAGTTACCGAGGAACTACATGGCAAATTAAGTTCAACCTGGATGATGTGGAGGCAAGTAAAATCTACAAATTAAGGTTGTCACTTGCAAGTGCAAATGTATCCGAGTTACAGGTTAGAGTGAATGATTCAAAACAAGATCCTGCATTGTTTACGACAGGAGTGATTGGGAAGGATAATGCCATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCAGCATTGACGTGCCTGGTCTTCTGCTAGAGAATGGTGTTAATACTATATTTCTAACACAGACTATGGCTACTGGCCCCTTGGCCCTCTTCCAAGGGATAATGTACGATTATATTCGTCTAGAAGATACTAAATTATAA 1932 0.4291 MASQGVQLRIEDTQVVMDNGTVQVYLSNPGGFVTRIQYNGTDNLLEVLSESDDIGYWDVVWSEAGSTGTTGTFEKIVGTSFSVITENEEQVEICFTSKWDPSLKGKRAPLNIDKRYVMLRNSSGFYSYAIFEHLQEWPAFNIPQIRIVYKLRKDKFHFMTVSDNRQRFMPLPEDRSPERGKALVPPEAVLLVDPVEPEFKGEVDDKYQYSNENKDLKVHGWISSQSEADPAMGFWVIIPSNEFRSGGPVKQNLTSHVGPYCLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPIFVYLNTLLDADDPLELWEDANHQMEEEVQSWPYDFPASEDFQKTSQRGSVCGILLVRDRCLSDEYIIARDAYVGVAPPGEAGSWQRECKGYQFWSRTNEEGYFSINNIRSGDYNLYAWVPGFIGDYWNNAVLTITPGCEIDAGDIIYEPPRDGPTLWEIGIPDRSANGFYVPDPNPNFINKLFVNHPDKFRQYGLWERYAELYPNEDLIYTVGASDYTKDWFFAQVTRKQEDGSYRGTTWQIKFNLDDVEASKIYKLRLSLASANVSELQVRVNDSKQDPALFTTGVIGKDNAIARHGIHGLYWLFSIDVPGLLLENGVNTIFLTQTMATGPLALFQGIMYDYIRLEDTKL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01149 643 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Cca05g01149 643 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Cca05g01149 643 CDD RGL4_C 449 639 - -
Cca05g01149 643 SUPERFAMILY Galactose mutarotase-like 12 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca05g01149 643 Gene3D - 445 639 - -
Cca05g01149 643 Gene3D - 6 280 IPR014718 GO:0030246
Cca05g01149 643 CDD RGL4_N 8 298 - -
Cca05g01149 643 Gene3D - 336 432 - -
Cca05g01149 643 SUPERFAMILY Starch-binding domain-like 376 432 IPR013784 GO:0030246
Cca05g01149 643 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Cca05g01149 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 640 - -
Cca05g01149 643 CDD RGL4_M 338 437 IPR029413 -
Cca05g01149 643 PANTHER LG27/30-LIKE GENE 2 640 - -
Cca05g01149 643 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01149 Cca-Chr5 28859382 28864907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01149 1 639 Polysaccharide Lyase AT1G09890 62.500 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01149 K18195 - gmx:100815677 1179.85