Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01148 ATGGCCTCACAAGCAGTGCAGTTGCGTATCGAACACAGTCGAGTGGTTATGGACAATGGCATAGTGCAAGTGTATTTATCCAACCCAGGTGGATTTGTTACCAGAATACAATATAATGGCACTGATAATCTTCTTGAAATTCTTAACGAAAGAGATAATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCTGGAAGCACAGGAACAACTGGGACATTTGAAAGGATTGTGGGAACAAGTTTTAGTGTTGTGACGGAAAATGAAGAAAGGGTTGAAATCTCGTTCACTAGTAAGTATGTGATGCTTCGTGATTCGTCGGGATTCTATTCTTACGCCATTTTTGAGCACTTAGTGGAATGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTACAAGCTTCGTAAAGACATATTTGATTACATGGTGGTGTCGGATAATAGACAAAGATTTATGCCTCTTCCGGATGATAGATTACCGGGAAGAGGAAAAGAACTAGTTCCACCTGAGGCAGTTTTGCTCGTCAATCCTGTGGAGCCAGAATTTAAGGGAGAGGTGGATGACAAGTACCAATACTCGAGTGAGAACAAAGATCTTAAGGTTCATGGGTGGATAAGTTCCCAATCCGAAACAGATCCAGCCATGGGATTTTGGGTAATCATACCCAGTAATGAGTTCCGATCGGGTGGCCCAGTTAAACAGAACCTTACTTCCCACGTAGGCCCAATAAGCCTCGCGATGTTTCTTAGTGCTCACTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAACGAGCCGTGGAAGAAAGTTTTTGGACCAACTTTTGTTTATCTCAACACTTTGTTAGATGCTGATGACCCAGTACAGCTCTGGGAGGACGCTAAAAACCAGATGGAGGAGGAGGTTGAGAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAAAGTCTAGCCAACGGGGCAGTGTGTGTGGCACATTACTAGTTCGAGACAGGTATCTAAGTGATGAGTACATAATAGCACGAGATGCATATGTGGGAGTGGCACCACCAGGAGAAGCTGGATCTTGGCAAAGAGAATGCAAGGGATACCAGTTTTGGAGTAGAGCAAACGAAGAAGGGTACTTCTCAATCAACAATATACGCAGtttatataggcttaaatatatttttaTGATGTTATATTACTTGTTTATACTTCAGTCCTTGTTAATGCAATATGCAGGTTGTGAAATAGATGTTGGTGAAATTATTTATGAGCCACCAAGAGATGGCCCAACATTATGGGAGATAGGAATTCCTGATCGCTCTGCTAATGGATTCTATGTTCCTGATCCTAATCCCAACTTCATAAACAAGCTTTTTGTCGACCATCCAGACAAGTTTAGGCAGTATGGATTGTGGGAAAGATATGCGGAGTTGTACCCAAATGAGGATTTAATCTATACAGTGGGTGCCAGTGACTACACAAAAGATTGGTTCTTTGCACAAGTCACCAGGAAGCAAGAGGATGGCAGTTACAAAGGAACTACATGGCGAATTAAGTTCAACCTCGATGAAGTGGAGCCAAGTAAAATCTACAAATTACGGTTGGCACTTGCAAGTGCAAATGTCTCTGAGTTACAGGTGAGAGTGAATGATCCAAAACAAGATCCTCCATTGTTTACAACAGGAGTGATTGGGAAGGACAATGCCATAGCTAGACATGGAATTCATGGACTCCACTGGCTATTCAGCATCGACATACCTGCTCTTCTGCTACAGAATGGTGTTAACACTATATTTCTTACACAAACTATGGCTTCTGGTCCATTGCCCCTCTTCCAGGGCATAATGTACGACTATATTCGTCTAGAAGGTCCTACCCCTTTTCCTCCCATATAA 1890 0.4222 MASQAVQLRIEHSRVVMDNGIVQVYLSNPGGFVTRIQYNGTDNLLEILNERDNRGYWDVVWSEAGSTGTTGTFERIVGTSFSVVTENEERVEISFTSKYVMLRDSSGFYSYAIFEHLVEWPAFNIPQIRIVYKLRKDIFDYMVVSDNRQRFMPLPDDRLPGRGKELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLKVHGWISSQSETDPAMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDADDPVQLWEDAKNQMEEEVESWPYDFPASEDFQKSSQRGSVCGTLLVRDRYLSDEYIIARDAYVGVAPPGEAGSWQRECKGYQFWSRANEEGYFSINNIRSLYRLKYIFMMLYYLFILQSLLMQYAGCEIDVGEIIYEPPRDGPTLWEIGIPDRSANGFYVPDPNPNFINKLFVDHPDKFRQYGLWERYAELYPNEDLIYTVGASDYTKDWFFAQVTRKQEDGSYKGTTWRIKFNLDEVEPSKIYKLRLALASANVSELQVRVNDPKQDPPLFTTGVIGKDNAIARHGIHGLHWLFSIDIPALLLQNGVNTIFLTQTMASGPLPLFQGIMYDYIRLEGPTPFPPI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01148 629 CDD RGL4_N 13 281 - -
Cca05g01148 629 Pfam Polysaccharide lyase family 4, domain III 429 620 IPR029411 -
Cca05g01148 629 Gene3D - 427 621 - -
Cca05g01148 629 SUPERFAMILY Galactose-binding domain-like 426 621 IPR008979 -
Cca05g01148 629 SUPERFAMILY Galactose mutarotase-like 19 280 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca05g01148 629 Pfam Rhamnogalacturonate lyase family 98 186 IPR010325 -
Cca05g01148 629 Pfam Polysaccharide lyase family 4, domain II 344 384 IPR029413 -
Cca05g01148 629 Gene3D - 5 261 IPR014718 GO:0030246
Cca05g01148 629 CDD RGL4_C 431 621 - -
Cca05g01148 629 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 624 - -
Cca05g01148 629 CDD RGL4_M 321 419 IPR029413 -
Cca05g01148 629 PANTHER LG27/30-LIKE GENE 1 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01148 Cca-Chr5 28833924 28840376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01148 1 624 Polysaccharide Lyase AT1G09890 58.150 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01148 K18195 - gmx:100815677 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01148 05 28833924 28840376 Cca05g01148 05 28833924 28840376 ECH