Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01142 ATGGACCCAGCACCAATGTACGGACACTCCCAGCCCTTGAACATGCCCCCGCAGATCGAAAGcgacgacggctccggcgccgaggccgccgtcgacgccCACCACCACCACATTCAGTACGAAACGAATGCGCTCGAAGACGGTGCCGCCGCCGCCGGCGTCGTCGTCGAAGATGTTACATCCGATGCGGTCTATGTCTCCGGCGGTGGAGGCCCCGAAGAGTCCAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTTTTTGATGCCGTTACGCCTGACAAGGTTCAAGCGGTGTTGTTACTTTTGGGTGGATGTGAGCTATCATCTAGTGGTTCGCCATGTGTGGATGCGGTTAATCAACAGAATCAGAGGGGTTCAACGGAATATCCAGCAAGATGTAGTCTACCACAGCGAGCTGCCTCATTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGCTGCTTTGATAAAAAAGTGAGATATAGTGTACGGCAAGAAGTTGCGCTCAGGATGCATCGTAATAAGGGTCAGTTCACTTCGTCTAAGAAACAAGATGGAGCTAATAGTTGGGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTTATGCACACATTGTGGCATTAGTTCAAAAGCCACCCCGATGATGCGGCGAGGACCATCTGGTCCAAGGTCACTTTGCAATGCATGTGGGCTGTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCATGAACTCGCTCTTGTACCAGTTGAGCAGGTTGATGAACGGAATGACTCAGACTGTCGGACTGCTGCCGATCCTGCACATAACAATCTTGCTGCTTTCTCAGCATGA 864 0.4803 MDPAPMYGHSQPLNMPPQIESDDGSGAEAAVDAHHHHIQYETNALEDGAAAAGVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDAVNQQNQRGSTEYPARCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGTDQDSGQDDSQSETLCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHELALVPVEQVDERNDSDCRTAADPAHNNLAAFSA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01142 287 PANTHER GATA TRANSCRIPTION FACTOR 28 7 275 IPR045280 GO:0006355
Cca05g01142 287 MobiDBLite consensus disorder prediction 1 30 - -
Cca05g01142 287 Pfam GATA zinc finger 208 243 IPR000679 GO:0006355|GO:0043565
Cca05g01142 287 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Cca05g01142 287 CDD ZnF_GATA 208 252 IPR000679 GO:0006355|GO:0043565
Cca05g01142 287 MobiDBLite consensus disorder prediction 173 205 - -
Cca05g01142 287 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Cca05g01142 287 PANTHER GATA TRANSCRIPTION FACTOR 25 7 275 - -
Cca05g01142 287 Pfam tify domain 72 105 IPR010399 -
Cca05g01142 287 Pfam CCT motif 140 182 IPR010402 GO:0005515
Cca05g01142 287 SMART tify_2 71 106 IPR010399 -
Cca05g01142 287 MobiDBLite consensus disorder prediction 181 205 - -
Cca05g01142 287 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Cca05g01142 287 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cca05g01142 287 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 258 - -
Cca05g01142 287 Gene3D - 198 256 IPR013088 GO:0006355|GO:0008270
Cca05g01142 287 ProSiteProfiles GATA-type zinc finger domain profile. 202 266 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01142 Cca-Chr5 28740360 28746860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01142 72 280 Tify Gene Family AT4G24470 66.509 7.33e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca05g01142 CCT 2.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01142 - - pvu:PHAVU_008G182900g 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01142 05 28740360 28746860 Cca05g01142 05 28740360 28746860 ECH
Cca05g01142 05 28740360 28746860 Cca03g01290 03 30498689 30503432 PCT