Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01141 ATGCCTCACAGGGCCACTTACTTTTTCCCGAGGCAGTTCCCGGAGAGAGGGTTGGATGAATCTTCTAAGCAGAGATTGGATCGCGAGAAGAACAAAATCGTCAACTTCAACTCCATCAAATCATCAGATACCTTTGCCTTTGAAAGCGACGCGCCGAAAAAGCCAACGCCGCAAACTCCCGCCAAGGACGACGTCGTTTTCTCCTCCGCCAAGGAATCCGCGGTTTCCGACCTCTTCACCGGCGCTGACAAGTTCCGAACCAAGCAGAAACAAATCGCCGCTTTCTGCGATTGGTTGATCGATAAGAAGAAGGATCGGAACCGGCCGAGTCAACACAATTTCAAATCCTATGTCAACGAGGACGAGGAGGAGGATGACGACCGCGAGCTTCTGCTTCCGCTTCCgccgccgccgcaggcggcggaggcggcgtcggaggTGAAGGATGCCTTCGACCGGAACTTCGACCGGCAGGTTTCGCTGCCGCGGTTGTCCAGCGGGAGCAGCTACGCCGGAAGCCTGTTCACGCTGGACGGCACCGCCACATTTTCAAGTGACGTCACCAAGGACGAAACGTCGTCGTTTCAGGTCTTCACTgaagacgcgacgaagaagcatgaacaagaagaagaagaagaaaaagaaaaaCGCAGCACCGCGCAGAAGTACAAAGAGAGCTACTACCTGCAACTCGCGTTGGCGGAGAGGCTCTCTTGCTTGGCAAGCCTCGCCTCCGAACCTGTCATCACACTCGACGCTGGCCCCGAAACGTGGGACGCTGAATCCGTTTCTTATCGTCTATGGGTGAGTGGGTGCTTGTCGTACACGGACAAGATATCGGACGGTTTCTACAACATATTGGGGATGAATCCGTATCTGTGGGTGATGTGCAACGACGTGGAGGAAGAAGGGAAGCGGTTACCGACTCTGATGGCACTTAAGGCGGTTGAACCTAGCGAGACTTCCATAGAGGTAGTTCTTTTCGATAGACATGAGGACTCTCGGCTTAAGGAGCTTCAAGATAAAGCTCAAGAGTTGTATTCTGCTTCGGAGAACGCGTTGGTGCTGGTGGAGAAGCTCGGAAAACTCGTTGCCATATGCATGGGGGGTACGTTCCCGGTGGAGCAAGGAGATCTACACAAGCGGTGGAAGCTGGTTAGCAAGAGGTTGAGGAACTTTCACCAATGTGTTGTGCTTCCCGTGGGTAGCTTGTCTAGTGGACTCTGTAGGCATCGCGCGATTCTCTTCAAGAGATTAGCGGATTACATAGGTTTGCCATGTCGCATTGCTCGAGGTTGCAGGTACTGTGTTTCAGATCATAGATCGTCTTGCCTTGTCAAGATTAAAGATGATAGACAGCTCTCAAGGGAATATGTAGTTGACCTGGTTGGGGAACCAGGAAATGTCCATGGGCCGGATTCCTCAATTAATGGAGCCTACGTGTCTTCAATACCTTCCCCACTTCAGATTTCTCATTTGAAAGAAAACCGATCACCATATGTGGATGTTGCAGCATGTTCTCAATCTCTTGGTAACACATATTCAGGCTGTGTACAGGAAGATCAACAAGTTGAAGAAACTGATTTGCTGAAAAAAAATAATGGCTCTATTTATGCTGCAATAGATCAAACTTGTGGAGGTGTCTCTGAAGATCTTCACCCATCTAAAGCATCATTACAGGAATACCCCAGGCTCAGTAAAGATTCAGTTGTAGTACTAGAAGCTTCCTACAAAGAGATCATTGTAAAGGGGAGTTCTGGGGTAAAAAGTAACTATAAGCAATCTATACTGAGCTCATCTAGCAAATCAGAGCAGGAAGAAGGAAAAAATAAACTTGAAAATCAGGGTGCTGGGAATATTCCAAGATACTTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGAATCAAAGAGCGTATTGGTGCTGGATCATTTGGGACAGTGTATCGTGCTGAATGGCATGGATCAGATGTCGCTGTCAAAGTTTTAACAGTTCAGGATTTCCATGATGACCAGTTGAAAGAGTTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACTAAACGTCCTCATCTATCTATAGTAACAGAATATTTGCCTAGAGGAAGTTTATTCCGCTTAATACATAAGCCAGCATCTGGTGAGATTCTAGATCCAAGGAGAAGATTACGGATGACTTTAGACGTGGCTAAAGGGATCAATTATCTCCATTGTTTGAAGCCTCCAATTGTGCACTGGGATCTCAAAACCCCAAATCTGTTAGTGGACAAAAATTGGACTGTAAAGGTGTGTGATTTTGGATTGTCCCGATTTAAGGCGAACACTTTCTTATCATCAAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCCTGCAACAACCGTGGCATGGACTTAGTCATGCCCAGGTGGTAGGAGCTGTCGCTTTCCAGAATAGGAGGCTTGCTGTTCCTCCAAACATCTCCCCGGCATTGGCCTCCCTCGTGGAATCTTGTTGGGCCGATAACCCTGCTGATCGCCCATCTTTTGGTAGCATAGTTGAATCGCTAAAGAAGCTACTGAAGTCACCAGCAGATGCGATACGAATGGGTGGGAAATAA 2739 0.4593 MPHRATYFFPRQFPERGLDESSKQRLDREKNKIVNFNSIKSSDTFAFESDAPKKPTPQTPAKDDVVFSSAKESAVSDLFTGADKFRTKQKQIAAFCDWLIDKKKDRNRPSQHNFKSYVNEDEEEDDDRELLLPLPPPPQAAEAASEVKDAFDRNFDRQVSLPRLSSGSSYAGSLFTLDGTATFSSDVTKDETSSFQVFTEDATKKHEQEEEEEKEKRSTAQKYKESYYLQLALAERLSCLASLASEPVITLDAGPETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEEGKRLPTLMALKAVEPSETSIEVVLFDRHEDSRLKELQDKAQELYSASENALVLVEKLGKLVAICMGGTFPVEQGDLHKRWKLVSKRLRNFHQCVVLPVGSLSSGLCRHRAILFKRLADYIGLPCRIARGCRYCVSDHRSSCLVKIKDDRQLSREYVVDLVGEPGNVHGPDSSINGAYVSSIPSPLQISHLKENRSPYVDVAACSQSLGNTYSGCVQEDQQVEETDLLKKNNGSIYAAIDQTCGGVSEDLHPSKASLQEYPRLSKDSVVVLEASYKEIIVKGSSGVKSNYKQSILSSSSKSEQEEGKNKLENQGAGNIPRYLNLEPSLAMDWLEISWDDLRIKERIGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHKPASGEILDPRRRLRMTLDVAKGINYLHCLKPPIVHWDLKTPNLLVDKNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWHGLSHAQVVGAVAFQNRRLAVPPNISPALASLVESCWADNPADRPSFGSIVESLKKLLKSPADAIRMGGK 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01141 912 MobiDBLite consensus disorder prediction 45 64 - -
Cca05g01141 912 Gene3D Phosphorylase Kinase; domain 1 635 719 - -
Cca05g01141 912 MobiDBLite consensus disorder prediction 106 141 - -
Cca05g01141 912 MobiDBLite consensus disorder prediction 198 219 - -
Cca05g01141 912 ProSiteProfiles Protein kinase domain profile. 642 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01141 912 MobiDBLite consensus disorder prediction 200 219 - -
Cca05g01141 912 Pfam Ethylene-responsive protein kinase Le-CTR1 260 469 - -
Cca05g01141 912 CDD STKc_MAP3K-like 648 896 - -
Cca05g01141 912 Coils Coil 206 226 - -
Cca05g01141 912 SUPERFAMILY Protein kinase-like (PK-like) 623 895 IPR011009 -
Cca05g01141 912 PRINTS Tyrosine kinase catalytic domain signature 716 729 IPR001245 GO:0004672|GO:0006468
Cca05g01141 912 PRINTS Tyrosine kinase catalytic domain signature 757 775 IPR001245 GO:0004672|GO:0006468
Cca05g01141 912 PRINTS Tyrosine kinase catalytic domain signature 823 845 IPR001245 GO:0004672|GO:0006468
Cca05g01141 912 PRINTS Tyrosine kinase catalytic domain signature 867 889 IPR001245 GO:0004672|GO:0006468
Cca05g01141 912 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 139 910 - -
Cca05g01141 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Cca05g01141 912 Pfam Protein tyrosine and serine/threonine kinase 642 896 IPR001245 GO:0004672|GO:0006468
Cca05g01141 912 SMART serkin_6 642 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01141 912 ProSitePatterns Protein kinases ATP-binding region signature. 648 669 IPR017441 GO:0005524
Cca05g01141 912 Gene3D Transferase(Phosphotransferase) domain 1 721 908 - -
Cca05g01141 912 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 139 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01141 Cca-Chr5 28698033 28706141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01141 1 911 MAP Kinase Kinase Kinase AT4G24480 57.648 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca05g01141 PK_Tyr_Ser-Thr 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01141 - - gmx:100786546 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01141 05 28698033 28706141 Cca05g01141 05 28698033 28706141 ECH
Cca05g01141 05 28698033 28706141 Cca03g01292 03 30608679 30615149 PCT