Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01139 ATGACCCAACAACAGAACAAGGCTTGTGCTTTTCCGGCTACCAACTCCAACTATTCGGGTTTTCTTCTTGATCCTGCAAAATATGGTTTGCTGAATTTGGCGGAAAAACAAAGACTAGTCCATGAGATTGCTCAACAGTCAAAAGATGCCTCGAGCATGCTTCAGTCATTTACTCGCAGGGAACTTCTAGAAATAATCTGTGCTGAATTAGGCAAAGAGAGGAAGTACACAGGATATACCAAGAGTCAAATGATAGAACATCTTCTGAAGATAATTTCTAAGAACTCCAACTTGCAAATCAACGGAAATACTCCTGCTCGTTCTCCTGCCAAAAGTTACATTGGATCTAAAAGGAAAAAGAAACCTGCATCACAGGATTTACCTCTTGCTCCTCTAGTGAACAGTACTAAAGAGGAAACAGCGAAAGCCTATGTGTGTCAGAATGTTGCATGCAAAGCTGCATTGAATCCAGAAGATTCTTTTTGCAAGAGATGTTCTTGTTGTATATGTCATGGTTATGATGATAACAAGGATCCTAGTTTGTGGTTGACCTGCAGTGCTGATCTTTCCAATGAGGAGTCATGTGGAATGTCCTGTCATTTGCAATGTGCTTTGAGCAATCAAATGACTGGCATTTTGAAGGGTAGTTGTGGTATTAAGTTGGATGGAACCTTCTGTTGTGTTTCTTGTGGAAAAATTAATGAACTAATGAAGACATGGCGAAAGCAATTATTGGTTGCCAAAGAAGCAAGAAGAACGGATATACTCTCTTTGCGAATATCCCTAGCCCACCGAATTCTTGTAGGAACAGAAGTCTACAAGGAAGTGCAGAAGATTGTAGAAACTGCTCTCAAATTACTGGAGAATGAAGTGGGATCACTTGATCATGTATATGCTAGGATGACGCGTGGAATTGTGAGCAGGCTTTCATGTGGTGCTGAGGTTCAGAGATTGTGCTCTACTGCAATTGAATGTTTTGATTCAAAGTTTTCTGACCTTTTCTCTATTTGCGTGGAAAAGAAAGATGCACCAACATGCTCGATTCGCTTTGAAGAGTGTCTTCCTACTTCAGTTGTTATCGTGCTAGAGTACAAAGACAAACTTTTAAAGAACTTTCTAGGCTGCAGACTTTGGCACCGAATATCAACAATGGACTACCCTGAACAACCCACCTTCATTGTCTTGAGGCCTGAAAAAAGATTCAAGTTAGAAAACCTCCATCCTTCAACTGAGTACTTTTGTAAGGCTTCTCTGTTCAGCAGCACAGGGATTTTGGGTGCTGCAGAAGCTAAGTGGGTGACACCTTGTGAACCTTCCAATCCTTCAAGAGTTATTATTAGTCGCGGCGGCAATCATTTAAGATGGTCCCCTCAGAGATCCTCAGGTACAGGAATGGACATGTGTGCACATGACCAAATAACTGCTGAAATTCATCCCACAGAATCTGCTAACTCTGGCATGAATTTATCTGGAGAACATCTTGGGAAACACATCATCATTTCAAACAGCAAAAGCAGGTTTGAAGAGTTCCTCTCCAAGCCTCTATCACTAGAGCCTTTTTCATATAAAATTTTTGCTGCAGTTTCACCTGCCACACCTTCTAAATCCTATGAAATGAGGCAAATTCCTGGTTTGAATTCTAGAAAGCGCTCGAAGGAAAATGACTACGAGTATTCTGTCAGAGTGGTCAAGTGGTTAGAGCATCAGGGGCACATAGATGAAAACTTCAGAGTAAGATTTCTGACTTGGTTCAGCCTTAAGGCTACTCAGCAGGAGAGAAGGGTGGTGAGTGCTTTTGTTGATGCATTAATTGATGATCCAGCAAGCTTAGCAGACCAGATTATACACACTTTCAGTGATGAGATATGTTGTGAGCAAAAGCCTTAG 1887 0.4128 MTQQQNKACAFPATNSNYSGFLLDPAKYGLLNLAEKQRLVHEIAQQSKDASSMLQSFTRRELLEIICAELGKERKYTGYTKSQMIEHLLKIISKNSNLQINGNTPARSPAKSYIGSKRKKKPASQDLPLAPLVNSTKEETAKAYVCQNVACKAALNPEDSFCKRCSCCICHGYDDNKDPSLWLTCSADLSNEESCGMSCHLQCALSNQMTGILKGSCGIKLDGTFCCVSCGKINELMKTWRKQLLVAKEARRTDILSLRISLAHRILVGTEVYKEVQKIVETALKLLENEVGSLDHVYARMTRGIVSRLSCGAEVQRLCSTAIECFDSKFSDLFSICVEKKDAPTCSIRFEECLPTSVVIVLEYKDKLLKNFLGCRLWHRISTMDYPEQPTFIVLRPEKRFKLENLHPSTEYFCKASLFSSTGILGAAEAKWVTPCEPSNPSRVIISRGGNHLRWSPQRSSGTGMDMCAHDQITAEIHPTESANSGMNLSGEHLGKHIIISNSKSRFEEFLSKPLSLEPFSYKIFAAVSPATPSKSYEMRQIPGLNSRKRSKENDYEYSVRVVKWLEHQGHIDENFRVRFLTWFSLKATQQERRVVSAFVDALIDDPASLADQIIHTFSDEICCEQKP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01139 628 PANTHER OS08G0220600 PROTEIN 14 628 - -
Cca05g01139 628 MobiDBLite consensus disorder prediction 101 126 - -
Cca05g01139 628 PANTHER VIN3-LIKE PROTEIN 2-RELATED 14 628 IPR044514 GO:0010048|GO:0040029
Cca05g01139 628 CDD PHD_VIN3_plant 166 230 - -
Cca05g01139 628 Pfam PHD - plant homeodomain finger protein 146 265 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01139 Cca-Chr5 28677290 28681614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01139 23 622 PHD Gene Family AT5G57380 33.657 1.42e-105 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01139 - - gmx:100785502 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01139 05 28677290 28681614 Cca05g01139 05 28677290 28681614 ECH