Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01135 ATGACTAAAAAGCAAACGAAGGTTCCTTTCAGCAAGGAAGACGCTGCTTCTCTGTTGCAAAGGTATGATGCAGAAACTGTTTTGGTGATGCTTCAGGAATTGGCGAATCATCCACACTCTAAGTTCGATTGGGAGGAGTTGGTGGCGAAAACCACAACAGGAATTTCCGATGCAAGAGAGTATCAGATGCTGTGGCGTCATATAGCGTATGGTCACTCCTTCACTGAAAACGAAAATGAAGATGCTCCACTGTTGCAGGATGATGATAGTGACTTGGAGTGTGAACGAGAAGCATTACCCCGTGTAAACAAGGAAACTGCTGCGGCATGTGTAAAGGTAATGATATCATCTTTTAAGCTGAACGAGTGCATCTCTACTAGCTCAGTGATTCAGGCACCATTAACTATAAATGTTCCAGTCCTTGATTCAACTACAATTGCTAAAGAAAGTTCACAATCCTCTAATCTAAGGACGCAAGAGACAGAAATTATTTTTCCAGTTACTGTTAAGAGAAAGCCACTGCCCCCCAATATAAGAGCTGTTGAAACTGGTGGAGGGTTAGTCAGTAGCGACACATCCATTAAAAAGAAAAGATCAGCGTGGTCAGAGGAAGAGGACATGCAACTACGGGCAGCTGTTCAGAAGTGGGGTGAAGGGAATTGGGCGCATATGGCTAAAAGAGATGACTTTCCTATTAAGAGAAGTACCTCACAGTTGTGTAAGAGGTGGAGCACCTTACGAAAGAAAGAGGATGGCACCAGTTGA 765 0.4366 MTKKQTKVPFSKEDAASLLQRYDAETVLVMLQELANHPHSKFDWEELVAKTTTGISDAREYQMLWRHIAYGHSFTENENEDAPLLQDDDSDLECEREALPRVNKETAAACVKVMISSFKLNECISTSSVIQAPLTINVPVLDSTTIAKESSQSSNLRTQETEIIFPVTVKRKPLPPNIRAVETGGGLVSSDTSIKKKRSAWSEEEDMQLRAAVQKWGEGNWAHMAKRDDFPIKRSTSQLCKRWSTLRKKEDGTS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01135 254 SUPERFAMILY Homeodomain-like 195 247 IPR009057 -
Cca05g01135 254 Gene3D - 190 252 - -
Cca05g01135 254 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 251 - -
Cca05g01135 254 SMART sant 197 249 IPR001005 -
Cca05g01135 254 CDD SANT_TRF 201 248 - -
Cca05g01135 254 ProSiteProfiles Myb-like domain profile. 193 247 IPR001005 -
Cca05g01135 254 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 251 - -
Cca05g01135 254 Pfam Myb-like DNA-binding domain 198 246 IPR001005 -
Cca05g01135 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 251 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01135 Cca-Chr5 28613217 28618240 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g01135 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01135 - - gmx:100819057 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01135 05 28613217 28618240 Cca05g01135 05 28613217 28618240 ECH
Cca05g01135 05 28613217 28618240 Cca03g01299 03 30695164 30699376 PCT