Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01131 ATGTCATCGCCCTCAGTTCTCTCCACCAATCACTACTTTGTGCCATTCAAGCCAAGCACAAGTGTTCTAGTGGGTCTGTTAACCGCTACCTTCTCTCTCACCTTCCTTTTCCTCCTCTACATCAAGCATTGCAATGATGGCAACACCTTTGTCTCTCACTCAAGTTTCCAACCCTCACACGTGCGAAAAAACTCTGGCGTTGATCGTGATGTTCTAGATTCGTTGCCGACTTTCAGATTTGAGTCATTGAAGGGGCAAAAGAATGGACTCGATTGTGCTGTTTGTCTCGGCAAGTTCGAGGATTGTGAGGTTTTAAGGTTGTTGCCCGAGTGCAAGCATGCATTCCACATGGGGTGCGTAGACACGTGGCTTTTCACACATTCCACGTGTCCGCTTTGTCGCTATAGGGTCGAACCTGACGGCGTTGTTGATGGGTTAGATGTCGAGAAAGGACAAGACAACGATGTGTCGCGAGGAGAAAATGAGAACGCAGGCACGACGTCGTTTAGGAGGTCGTTAGACAGTGTGGTGGAACATGGGTTGGAGTTGGAGCATCGTATTATTGTCTCACCTTGCTCCAATTTGCGGGGTAGGGTTCACCAACGATGGAGTGATTTTCAGCCACGTGATGCATTGTACTTGACATCAGATATGGTCACGTGGAAGGCACATGGGGGAGGGGGAGGAAGAAGAAGGAGTGATAGTAGTAGTAATGTTGTTGGAGAGGTGATGGAGAACGATGGAGTGATGAAGAATGTGAGGAGTTTGTCAAAGGTGACAGGAATAAGGAGTGTTCAAGGTTTACTATTATTATTCTGA 819 0.475 MSSPSVLSTNHYFVPFKPSTSVLVGLLTATFSLTFLFLLYIKHCNDGNTFVSHSSFQPSHVRKNSGVDRDVLDSLPTFRFESLKGQKNGLDCAVCLGKFEDCEVLRLLPECKHAFHMGCVDTWLFTHSTCPLCRYRVEPDGVVDGLDVEKGQDNDVSRGENENAGTTSFRRSLDSVVEHGLELEHRIIVSPCSNLRGRVHQRWSDFQPRDALYLTSDMVTWKAHGGGGGRRRSDSSSNVVGEVMENDGVMKNVRSLSKVTGIRSVQGLLLLF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01131 272 PANTHER RING-H2 FINGER PROTEIN ATL43 182 266 - -
Cca05g01131 272 PANTHER RING-H2 FINGER PROTEIN ATL43 6 143 - -
Cca05g01131 272 Pfam Ring finger domain 91 134 IPR001841 -
Cca05g01131 272 MobiDBLite consensus disorder prediction 146 167 - -
Cca05g01131 272 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Cca05g01131 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 182 266 - -
Cca05g01131 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 143 - -
Cca05g01131 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 141 IPR013083 -
Cca05g01131 272 SMART ring_2 92 133 IPR001841 -
Cca05g01131 272 CDD RING-H2_PA-TM-RING 91 134 - -
Cca05g01131 272 SUPERFAMILY RING/U-box 71 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01131 Cca-Chr5 28547168 28548161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01131 18 262 C3H Transcription Factor Family AT5G05810 36.873 1.62e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01131 K19041 - vun:114195049 231.106