Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca05g01131 | ATGTCATCGCCCTCAGTTCTCTCCACCAATCACTACTTTGTGCCATTCAAGCCAAGCACAAGTGTTCTAGTGGGTCTGTTAACCGCTACCTTCTCTCTCACCTTCCTTTTCCTCCTCTACATCAAGCATTGCAATGATGGCAACACCTTTGTCTCTCACTCAAGTTTCCAACCCTCACACGTGCGAAAAAACTCTGGCGTTGATCGTGATGTTCTAGATTCGTTGCCGACTTTCAGATTTGAGTCATTGAAGGGGCAAAAGAATGGACTCGATTGTGCTGTTTGTCTCGGCAAGTTCGAGGATTGTGAGGTTTTAAGGTTGTTGCCCGAGTGCAAGCATGCATTCCACATGGGGTGCGTAGACACGTGGCTTTTCACACATTCCACGTGTCCGCTTTGTCGCTATAGGGTCGAACCTGACGGCGTTGTTGATGGGTTAGATGTCGAGAAAGGACAAGACAACGATGTGTCGCGAGGAGAAAATGAGAACGCAGGCACGACGTCGTTTAGGAGGTCGTTAGACAGTGTGGTGGAACATGGGTTGGAGTTGGAGCATCGTATTATTGTCTCACCTTGCTCCAATTTGCGGGGTAGGGTTCACCAACGATGGAGTGATTTTCAGCCACGTGATGCATTGTACTTGACATCAGATATGGTCACGTGGAAGGCACATGGGGGAGGGGGAGGAAGAAGAAGGAGTGATAGTAGTAGTAATGTTGTTGGAGAGGTGATGGAGAACGATGGAGTGATGAAGAATGTGAGGAGTTTGTCAAAGGTGACAGGAATAAGGAGTGTTCAAGGTTTACTATTATTATTCTGA | 819 | 0.475 | MSSPSVLSTNHYFVPFKPSTSVLVGLLTATFSLTFLFLLYIKHCNDGNTFVSHSSFQPSHVRKNSGVDRDVLDSLPTFRFESLKGQKNGLDCAVCLGKFEDCEVLRLLPECKHAFHMGCVDTWLFTHSTCPLCRYRVEPDGVVDGLDVEKGQDNDVSRGENENAGTTSFRRSLDSVVEHGLELEHRIIVSPCSNLRGRVHQRWSDFQPRDALYLTSDMVTWKAHGGGGGRRRSDSSSNVVGEVMENDGVMKNVRSLSKVTGIRSVQGLLLLF | 272 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca05g01131 | 272 | PANTHER | RING-H2 FINGER PROTEIN ATL43 | 182 | 266 | - | - | |
Cca05g01131 | 272 | PANTHER | RING-H2 FINGER PROTEIN ATL43 | 6 | 143 | - | - | |
Cca05g01131 | 272 | Pfam | Ring finger domain | 91 | 134 | IPR001841 | - | |
Cca05g01131 | 272 | MobiDBLite | consensus disorder prediction | 146 | 167 | - | - | |
Cca05g01131 | 272 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 134 | IPR001841 | - | |
Cca05g01131 | 272 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 182 | 266 | - | - | |
Cca05g01131 | 272 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 6 | 143 | - | - | |
Cca05g01131 | 272 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 141 | IPR013083 | - | |
Cca05g01131 | 272 | SMART | ring_2 | 92 | 133 | IPR001841 | - | |
Cca05g01131 | 272 | CDD | RING-H2_PA-TM-RING | 91 | 134 | - | - | |
Cca05g01131 | 272 | SUPERFAMILY | RING/U-box | 71 | 139 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca05g01131 | Cca-Chr5 | 28547168 | 28548161 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca05g01131 | 18 | 262 | C3H Transcription Factor Family | AT5G05810 | 36.873 | 1.62e-46 | 159 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca05g01131 | K19041 | - | vun:114195049 | 231.106 |