Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01130 ATGCAGAGCGCCACGCGAGTGGAAGCGGAGCGCCTCCTGGGGATCTCGGAGAAGCTCCTCCAGAACCGCGATCTCATGGGTTCACGGGAGTTCGCCATCCTGGCCCAGGAGACCGAGCCCCTCCTCGAAGGCTCCGACCAGATCCTCGCCATCGTCGAAGTCCTCCTCGCCGCCGACAAGCGCGTCAACAACCACCCCGACTGGTACGCCGTCCTCCAGGTGGACCGCCGCTCCGACGACCTCGACCTCATCAAAAAGCAGTACCGCCGCCTCGCCCTCCTCCTCCACCCCGACAAGAGCCGCTTCCCATTCGCCGACCACGCCTTCAAGCTCGTCGCCGACGCCTGGGCCCTCCTCTCCGACCCCCTCCGCAAATCCGTCTACGACAAGGAACTCTCCTTCTTCTCCCGCGTCGATTTGTCCGTCCCCGGATGGGTCCAGCAGGAGAAGCTTCCCGTCCGCAGGACGGGCCCTGGGCCTGGGCCCGGGCCCAGCGCCCGCAACAGCGCTGCGGCCCGCGACGAGATTCACGCGGACGAAAACTCCCGCAGGAGAAACTCCACTTTCTGGACCGCATGCCCCTACTGTTACCGTTTGTACGAATACCCTAGGGTTTACGAGGCTTGTTGCTTACGCTGCCAGAATTGCGAGAGATCCTTCCACGGCGTGCCGATTCCGTCGCTGCCGCCGCTGGTTCCCGGCCAGGACGCTTATTATTGCTGCTGGGGGTTTTTTCCCATGGGATTCGTTCTCGGAAGCTTCGGTTCTCCGGAGAAAGAGGCGGCGGCGGAgcctccgccgcctccgccgcctgctacgcagccgGCTTCTACCTTACCGAACTGGATGCCGGTGGTATCAGCCAACGGCGGGGAGAGTGCACAGGCGACGCCTGTGCCGGTGGCGAGGGTGACTAGATCGGGGGCGGCGGCGGTGGCCGGAGGTGTTTCAAACGGGACGGGGCCGAAGAAGAGAGGGAGGCCGAGGAAGTACCCTTTGCCGTCGTga 1008 0.621 MQSATRVEAERLLGISEKLLQNRDLMGSREFAILAQETEPLLEGSDQILAIVEVLLAADKRVNNHPDWYAVLQVDRRSDDLDLIKKQYRRLALLLHPDKSRFPFADHAFKLVADAWALLSDPLRKSVYDKELSFFSRVDLSVPGWVQQEKLPVRRTGPGPGPGPSARNSAAARDEIHADENSRRRNSTFWTACPYCYRLYEYPRVYEACCLRCQNCERSFHGVPIPSLPPLVPGQDAYYCCWGFFPMGFVLGSFGSPEKEAAAEPPPPPPPATQPASTLPNWMPVVSANGGESAQATPVPVARVTRSGAAAVAGGVSNGTGPKKRGRPRKYPLPS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01130 335 MobiDBLite consensus disorder prediction 261 277 - -
Cca05g01130 335 Pfam DnaJ domain 67 129 IPR001623 -
Cca05g01130 335 MobiDBLite consensus disorder prediction 151 179 - -
Cca05g01130 335 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Cca05g01130 335 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 330 - -
Cca05g01130 335 Gene3D DnaJ domain 56 139 IPR036869 -
Cca05g01130 335 MobiDBLite consensus disorder prediction 278 294 - -
Cca05g01130 335 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Cca05g01130 335 SUPERFAMILY Chaperone J-domain 59 132 IPR036869 -
Cca05g01130 335 CDD DnaJ 67 121 IPR001623 -
Cca05g01130 335 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cca05g01130 335 PRINTS DnaJ domain signature 88 103 IPR001623 -
Cca05g01130 335 PRINTS DnaJ domain signature 104 124 IPR001623 -
Cca05g01130 335 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 330 - -
Cca05g01130 335 MobiDBLite consensus disorder prediction 257 335 - -
Cca05g01130 335 SMART dnaj_3 66 124 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01130 Cca-Chr5 28535594 28537481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01130 5 333 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 48.991 9.52e-106 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01130 - - gmx:100816918 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01130 05 28535594 28537481 Cca05g01130 05 28535594 28537481 ECH
Cca05g01130 05 28535594 28537481 Cca03g01309 03 30815210 30816266 PCT