Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01129 ATGCTTCCCTTTCGGAGATTCTACGGCTTCGAGAGCTGGCTAGACCACCACTCATCAGCCTCCTTGATCAAGAAAGCAGTCCAGCTGGAGAGTGACAGATCAAAATCAACGGAAGCCTGCAAGAGCCACAGGGAAGCCGAGAGGAGGCGCAGGCAGAGAATCAACGCTCACCTCTCCACCCTACGCTCTCTCCTTCCCAACGCTGCCAAGTCTGATAAGGCGTCGCTGCTCGGGGAAGTGGTGGAGCACGTCAAACGCCTCAGGAAGGAGGCCGATGACGTGGCGCGCGGAGACGACCCGGCTTCGCCTCAGCCCTTTCCCGGGGAGAGCGACGAGGCCACCGTCAGTTGCTGCGACGGCGAGGGGCGCCTGAGGGCCACGCTCTGCTGCCAGGACCGCCCGGGGCTCCACCGCGACCTCTCGCAGGCGATACGGGCGGTCAGGGCCAGGGCGGTTCGCGCCGAGATGATGACGGTGGGGGGACGGACCAAGAGCGTTGTGGTGATGGAGTGGCCGGAGGGTGAAGGTGGTGGAGCCAAGGAGGAGGTGGGGGCGCTCGAACGGGCTTTGAAGGCGGTCATGGAGAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCCGTTGTTTTGGGCCAGAAGCGAGCTAGGGATTCTTATGGTTCGCCTTCTACTGAGGTTGACTCTGCCTCTGCTTTCTTCTTCAGGAATGGTGGAGTATGTTGA 720 0.6181 MLPFRRFYGFESWLDHHSSASLIKKAVQLESDRSKSTEACKSHREAERRRRQRINAHLSTLRSLLPNAAKSDKASLLGEVVEHVKRLRKEADDVARGDDPASPQPFPGESDEATVSCCDGEGRLRATLCCQDRPGLHRDLSQAIRAVRARAVRAEMMTVGGRTKSVVVMEWPEGEGGGAKEEVGALERALKAVMENRALVGFGMGPVVLGQKRARDSYGSPSTEVDSASAFFFRNGGVC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01129 239 Pfam Helix-loop-helix DNA-binding domain 40 87 IPR011598 GO:0046983
Cca05g01129 239 PANTHER OS09G0463900 PROTEIN 27 216 - -
Cca05g01129 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Cca05g01129 239 Gene3D - 123 199 - -
Cca05g01129 239 MobiDBLite consensus disorder prediction 91 113 - -
Cca05g01129 239 Gene3D - 32 95 IPR036638 GO:0046983
Cca05g01129 239 PANTHER TRANSCRIPTION FACTOR BHLH30 27 216 IPR045847 GO:0003700|GO:0006355
Cca05g01129 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 95 IPR036638 GO:0046983
Cca05g01129 239 SMART finulus 44 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01129 Cca-Chr5 28509695 28510966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01129 34 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.471 3.90e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g01129 HLH 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01129 - - ccaj:109815026 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01129 05 28509695 28510966 Cca05g01129 05 28509695 28510966 ECH