Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01126 ATGTTCTCAAAGCTTCATCcaacacaacaacaacaacaacaacaacagcatcaacTTTTTCAATTCTCCCGGGAATGTCAAACGCCCGACGACCACCACGCCCGCCCCAACGCCGCCTCCGCCTCCGCCAGCGACGGGGCCACAATTGAAGTGGTCAGGCGGCCCAGGGGCCGCCCTCCCGGCTCCAAAAACAAGCCCAAACCTCCGCTCGTTATAACCCGGGAGCCCGAGCCCGCTATGAGCCCATTCATTTTAGAAATCCCGGGCGGGAGCGACGTGGTCGAGGCCCTGGCCCGGTTCAGCCGCAGAAAGAACACGGGCCTATGCGTCCTGTCCGGTTCGGGAACCGTCGCCAACGTCACTCTCCGTCAACCCTCCGTCACTCCCGGCGCCACCGTCACTTTCCACGGCCGCTTCGATGTCCTCTCCCTCTCCGCCACGCTCCTCCTCCAAGCCTCGCCGGCGATCGCGCCCTCCGCCTTCGCCGTCTCGCTCGCCGGCCCGCAGGGCCAGATCGTCGGCGGACTCGTCGTCGGGAGGCTCACCGCCGCCGGGACGGTGTTCGTGATCGCCGCGTCGTTCAACAACCCGTCGTTTCACCGGCTGTCCTCGGAGGAGGAGGCGCAGAACAACTCGCCGTCcggcggcggaggcgagtctccggcggtttcgggcggcggcgcggagagcggGCATGTCCCCGCTGAGTCGTGTATGTACAGCTGTCACCTTCCTTCGGATGTGATTTGGCCTCCTACCGCTAGAGCACCTTTCTGA 777 0.5753 MFSKLHPTQQQQQQQQHQLFQFSRECQTPDDHHARPNAASASASDGATIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMSPFILEIPGGSDVVEALARFSRRKNTGLCVLSGSGTVANVTLRQPSVTPGATVTFHGRFDVLSLSATLLLQASPAIAPSAFAVSLAGPQGQIVGGLVVGRLTAAGTVFVIAASFNNPSFHRLSSEEEAQNNSPSGGGGESPAVSGGGAESGHVPAESCMYSCHLPSDVIWPPTARAPF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01126 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 256 IPR014476 GO:0003680
Cca05g01126 258 MobiDBLite consensus disorder prediction 1 25 - -
Cca05g01126 258 MobiDBLite consensus disorder prediction 202 232 - -
Cca05g01126 258 PIRSF ESCAROLA 1 249 IPR014476 GO:0003680
Cca05g01126 258 CDD DUF296 82 194 IPR005175 -
Cca05g01126 258 MobiDBLite consensus disorder prediction 1 75 - -
Cca05g01126 258 Gene3D - 81 212 - -
Cca05g01126 258 MobiDBLite consensus disorder prediction 202 218 - -
Cca05g01126 258 ProSiteProfiles PPC domain profile profile. 77 215 IPR005175 -
Cca05g01126 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 207 - -
Cca05g01126 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 9 256 - -
Cca05g01126 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 196 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01126 Cca-Chr5 28486338 28487691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01126 45 257 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 63.436 4.79e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01126 - - gmx:100811053 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01126 05 28486338 28487691 Cca05g01126 05 28486338 28487691 ECH
Cca05g01126 05 28486338 28487691 Cca03g00057 03 837507 839484 PCT