Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01109 ATGGCACCCAGTTTTGATTGCGTTTCTAGCCTTCTCTGTGCGGAAGACAACAGTATTTTTGACGAAAACGATTATGGGGGTTCGGGGGAGATGTTGGATGACACGTGGCAGCATCCTGGATATGATCGAAGCCTTAGTTTAAGTGAGAACTTGGGTGGTCCTATTGGGGGTTTTCCATTGATGAGTGATGACTGTTTGAGATTGATGGTGGAAAAGGAATTCCACCACTTGCCTAATGGTGATTATGTTAATAGGCTGAGGAGTGGAGATTTGAACTTTGAAGCCAGAAATGAGGCCATTGATTGGATTGAAAAGGTCCGGGAGCACTTTAGTTTTGGACCTCTCTGTGCATATCTATCTATAAACTATTTGGACCGCTTCCTTTCTGAATATGAATTACCAAAAAAAGGCTGGACAATGCAATTGTTGGCTGTGGGGTGCTTATCTTTGGCAGCCAAAATGGAAGAGACTGATGTTCCTTTGTCTCTTGATTTGCAGGTGGGTGAATCTAAATATATATTTGAAGCTAAAACAGTTCAGAGGATGGAGCTTCTGGTGCTAAGCACATTGAGGTGGAGAATGCAGGCAGTTACTCCATTTTCCTTTATTGACTATTTTCTCCACAAGATCAATGATGGACAAAGTCCAAATGGAGATTCAATTTTGCAATCCATCCAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCTTAGAGTTCAGACCCTCGGAGATTGCAGCAGCAGTGGCAATACATGTGGTGGGGGAGGCCAAAACAGTTCACAGTGAAGAAGCAATTTCTGTTCTGCTTCAGCTTGTGGAAAAGGAGAGGGTCTTGAAGTGTGTTAAAATGTTCCAAGAGCTGTCATCAAACAGTGATTCTGCTAAGGATGCTAGTGCTTCTGTTTCTGTACCTTGTGTGCCCAAAAGCCCAATAGGGGTGTTGGACACTGCATGCTTCAGCTTCAAAAGTGATGACACAAATGCCGCTTCATGTGCAAATTCTCCACATAACAATAGTCCAGATGCTAAAAGGAGGAGGCTAAACAAAACCTTTGGAGAATAG 1065 0.4291 MAPSFDCVSSLLCAEDNSIFDENDYGGSGEMLDDTWQHPGYDRSLSLSENLGGPIGGFPLMSDDCLRLMVEKEFHHLPNGDYVNRLRSGDLNFEARNEAIDWIEKVREHFSFGPLCAYLSINYLDRFLSEYELPKKGWTMQLLAVGCLSLAAKMEETDVPLSLDLQVGESKYIFEAKTVQRMELLVLSTLRWRMQAVTPFSFIDYFLHKINDGQSPNGDSILQSIQLILSTVRGIDFLEFRPSEIAAAVAIHVVGEAKTVHSEEAISVLLQLVEKERVLKCVKMFQELSSNSDSAKDASASVSVPCVPKSPIGVLDTACFSFKSDDTNAASCANSPHNNSPDAKRRRLNKTFGE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01109 354 SMART cyclin_7 101 188 IPR013763 -
Cca05g01109 354 PANTHER CYCLINS 1 348 IPR039361 -
Cca05g01109 354 SUPERFAMILY Cyclin-like 179 289 IPR036915 -
Cca05g01109 354 Pfam Cyclin, N-terminal domain 65 194 IPR006671 -
Cca05g01109 354 SUPERFAMILY Cyclin-like 59 194 IPR036915 -
Cca05g01109 354 SMART Cyclin_C_2 197 323 IPR004367 -
Cca05g01109 354 CDD CYCLIN 96 187 IPR013763 -
Cca05g01109 354 MobiDBLite consensus disorder prediction 340 354 - -
Cca05g01109 354 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 348 - -
Cca05g01109 354 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Cca05g01109 354 Pfam Cyclin, C-terminal domain 197 296 IPR004367 -
Cca05g01109 354 Gene3D - 79 195 - -
Cca05g01109 354 MobiDBLite consensus disorder prediction 331 354 - -
Cca05g01109 354 Gene3D - 67 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01109 Cca-Chr5 28313769 28316767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01109 49 333 Core Cell Cycle Gene Families AT2G22490 48.495 2.65e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01109 K18810 - gmx:100803873 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01109 05 28313769 28316767 Cca05g01109 05 28313769 28316767 ECH