Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01107 ATGCTGCACCCTTTGATGTGGGGAAGCAAAATGTTAGGCCATTCTGGTGAACCTCATGGTTGGTTTTATTGTTTGCCTCGCTTTCGACAGGGCTTTACTATGCCTTCTCGAAACTTCAATGCAGAGGAAAAACTCCCTGCTGCCAAAGGCTTTACAGGCGAGGAAATTGTACAGAATGGGGAACCGGGTTTCCCTCAAAAGCAATTTCTGGTTATTGATCAAACTGGTGATCAAACAACCCTGGTTTATAGTTCAGGGTTTGGGGCTTCTATTGAGTATAATTTGAAGATGCATGGTTCTAACAATTTGAACAATGGAAATGAGTTACATTCTTTAAGAAGAGATGTGAATCATGTGGTTGGACTTGGACCAACTTTGGATGATAAAGTTGAAGAAAATCAAGAAACTTATGATGACATTGAAAGTGAGATGCATGAAGACACAGAGGAAATCAATGCATTGCTTTACTCTGACAGTGACGGTTATTCCAGTGAGGATGATGATGATGAAGTTACTAGCACAGGGCATTCGCCCAGTACAATGACCACTCATGATAACCAGGAAGAACCTGATAGGGGTACTGCTGAAGAAGTTGCAAGCTCAATCGGAGAATCAAAGAAGCGAAAGCTGTGTTATGATGATGACATGCAGTTCATGGACACTGCTAGTTCTCTGAATGGGAAAAGACCCTTTGAAATGGAAAATGATGCAGAATCAAGATGCTCTAATGGTGGCAACAGTAGCCGAGGGTCAGGTGAAATGGGTTCGTTGTCAGGTAATAAAAAGATGAGAAAGGAGAAAATCCAAGACGTTCTGAGCATTCTGCAGTACTTAGTTCCTGGTGGTAAGGACAAGGACCCAATTGAGCTTCTTGATGAAGCCATACGTTGCTTGAAATCATTGAAACTCAAGGCTAAAGAACTTGGACTTGATGCTATATAA 942 0.4172 MLHPLMWGSKMLGHSGEPHGWFYCLPRFRQGFTMPSRNFNAEEKLPAAKGFTGEEIVQNGEPGFPQKQFLVIDQTGDQTTLVYSSGFGASIEYNLKMHGSNNLNNGNELHSLRRDVNHVVGLGPTLDDKVEENQETYDDIESEMHEDTEEINALLYSDSDGYSSEDDDDEVTSTGHSPSTMTTHDNQEEPDRGTAEEVASSIGESKKRKLCYDDDMQFMDTASSLNGKRPFEMENDAESRCSNGGNSSRGSGEMGSLSGNKKMRKEKIQDVLSILQYLVPGGKDKDPIELLDEAIRCLKSLKLKAKELGLDAI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01107 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Cca05g01107 313 MobiDBLite consensus disorder prediction 239 255 - -
Cca05g01107 313 PANTHER TRANSCRIPTION FACTOR BHLH145 12 311 IPR037546 -
Cca05g01107 313 Coils Coil 130 150 - -
Cca05g01107 313 MobiDBLite consensus disorder prediction 158 205 - -
Cca05g01107 313 PANTHER TRANSCRIPTION FACTOR BHLH145 12 311 - -
Cca05g01107 313 MobiDBLite consensus disorder prediction 234 260 - -
Cca05g01107 313 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01107 Cca-Chr5 28263760 28264793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01107 20 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 32.639 5.60e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01107 - - gmx:100803342 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01107 05 28263760 28264793 Cca05g01107 05 28263760 28264793 ECH
Cca05g01107 05 28263760 28264793 Cca03g01319 03 31002693 31006235 PCT