Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01104 ATGCGCTACCTCACTTGCAACACCGACTCCGCAATCGCCACATGTAAGCCCAACAAAAGCCCAACAAAGAAAGCCCACCACCGGGTGCGCCACTTCGCCTACTCCGACATCCTCGCGGCCACCAACCACTTCTCGGCCGAGAACTTCCTGGGCAAAGGCAGCCACGGGAGCGTCTACAAAGCGGCCCTGGACGCCGGCACACTAATCGCCGCCGTCAAAGTAACGAAACCCTCCAACGAGATCCAAATCCTCTCGCAGCTGAAAACGCGGCGTCTCGTAAACCTCATTGGCTTCTGCAACGACCAAACTAAGAAAGTCATCGTGGTCGAGTACATGCCCAACGGTTCGCTCCACGACCTTCTCCACTCATCGAAAGCGGTCCAACCCCCAAGCTGGACCGCCAGAGCCCGGTTCGCGCTTCAAATAGCGAAAGCGGTTCGCGCTTTGCACTCGTCCGAACCGCCCGTCATTCACCGTGACATTAAATCCTCCAACGTCCTAATCGACAAAAACTGGAACGCGCGACTCGCTGACTTCGGCCTCGCGCTCCGAGGACACGTCGCTGATTTTCAATTTTTTCCCGTCCCTCCAGCGGGGACGTTAGGCTACCTCGACCCGTGCTACCTTGCGCCGGCGGACTTGACTTTCAAGAGCGACGTCTTCAGCTTCGGCGTTTTGCTCTTCGAGATCGCCACCGGGAGGCACGCCATCGACGTCACCCACAGTCCTCCCTCGCTGCTCGATTGGGCGCTGCCGTTGCTCCGCCAGGGCCAGTATCACAACATTTGCGACCCGCGGATCGGACCTCCGCCGGACATGGCGGCGTTCCGGAAAATGGTTACGCTGGCGGCGAGCTGCGTGCGCTCCACGGCGGAGAGGCGGCCGGAGATGGCGGAGGTGGTGGAGTGCCTCACGGCGGTGAGGAAATGTTTCCGCACGCCGGTTATTTGGAAGAGATTCAAGAGGCGCGTGGTGGCGCGTGGGGAATTGAACATTGAATGGGACAGGAGTGAGGAGGAAGTTGTGACCGTGAGTAGTAGAAACTGTAGAAGGAATGGGAAGGTATCTAGTGTATCGGGTGTAGAGTGTGAGGGTGGACCCGCGAATCCAGCTGTTAGGTCCAGATCTGATGGTTCTGGTTTTTTCGGTGATGTAAAAATTAATAACTCTGGTTTGGCTGGGTTTAGGGTTTAG 1194 0.5762 MRYLTCNTDSAIATCKPNKSPTKKAHHRVRHFAYSDILAATNHFSAENFLGKGSHGSVYKAALDAGTLIAAVKVTKPSNEIQILSQLKTRRLVNLIGFCNDQTKKVIVVEYMPNGSLHDLLHSSKAVQPPSWTARARFALQIAKAVRALHSSEPPVIHRDIKSSNVLIDKNWNARLADFGLALRGHVADFQFFPVPPAGTLGYLDPCYLAPADLTFKSDVFSFGVLLFEIATGRHAIDVTHSPPSLLDWALPLLRQGQYHNICDPRIGPPPDMAAFRKMVTLAASCVRSTAERRPEMAEVVECLTAVRKCFRTPVIWKRFKRRVVARGELNIEWDRSEEEVVTVSSRNCRRNGKVSSVSGVECEGGPANPAVRSRSDGSGFFGDVKINNSGLAGFRV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01104 397 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Cca05g01104 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cca05g01104 397 Gene3D Phosphorylase Kinase; domain 1 6 111 - -
Cca05g01104 397 ProSiteProfiles Protein kinase domain profile. 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01104 397 Pfam Protein kinase domain 46 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01104 397 Gene3D Transferase(Phosphotransferase) domain 1 112 315 - -
Cca05g01104 397 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Cca05g01104 397 PANTHER OS01G0253100 PROTEIN 1 328 IPR045271 GO:0004714|GO:0006468
Cca05g01104 397 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 328 - -
Cca05g01104 397 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01104 Cca-Chr5 28211643 28213301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01104 28 304 Receptor kinase-like Gene Family AT3G59420 41.379 5.66e-66 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca05g01104 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01104 - - ccaj:109794283 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01104 05 28211643 28213301 Cca05g01104 05 28211643 28213301 ECH
Cca05g01104 05 28211643 28213301 Cca03g01316 03 30980229 30982788 PCT