Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01103 ATGGAATTCGACGACCAAGAGGAGCAGGACGAGGAAATGGGCATgccggagccgccgcatcccccgccgccgccCAGTTACGACTCGGTCGGGAACTCCGCCAGGTCCAAAATCGGCGCCGCCGAGGGGCGGAAAGGCGCGTTCGGCGCGGCGGCCGTGCGGTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGGCGGCCGGAGAGGACGGCACGCTGGAGGCCGTGATTTGCGCCGCCTGCAACTGCCACCGGAATTTCCACCGCAAGGAGATGGACGGCGAGATGAGCTCCTTccaccaccgccagccgccgccgccgccgctgcaccaccaccatcaattctccccgtactaccaccaccGCATCCCGCAGCATCCCCCCGGCGCCGGCTACCTCCACCACCCCCTGGCCACTCCGCCGATGGCGCAGCACCGGCCTCTGGCCCTCCCGGCGGCGGCCTCCGGCGGCGGACTGAGCCGCGACGAAGAAGACATGTCGAATCCGAgcagcagcggcggcggaggtggcggcggaggaggATCGAAGAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAACTCGGTTGGAGAATCCAGAAGCACGACGAATCTGCTGTGGAACAGTTCTGCGCTGAGACTAATGTGAAGCGAAACGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA 780 0.5115 MEFDDQEEQDEEMGMPEPPHPPPPPSYDSVGNSARSKIGAAEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEAVICAACNCHRNFHRKEMDGEMSSFHHRQPPPPPLHHHHQFSPYYHHRIPQHPPGAGYLHHPLATPPMAQHRPLALPAAASGGGLSRDEEDMSNPSSSGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVKRNVLKVWMHNNKNTLGKKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01103 259 MobiDBLite consensus disorder prediction 1 40 - -
Cca05g01103 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 258 - -
Cca05g01103 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 42 258 - -
Cca05g01103 259 Gene3D - 181 256 - -
Cca05g01103 259 SUPERFAMILY Homeodomain-like 183 257 IPR009057 -
Cca05g01103 259 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 253 IPR006455 -
Cca05g01103 259 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Cca05g01103 259 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Cca05g01103 259 MobiDBLite consensus disorder prediction 165 198 - -
Cca05g01103 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01103 Cca-Chr5 28201649 28203308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01103 1 255 ZF-HD Transcription Factor Family AT4G24660 52.918 1.37e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca05g01103 ZF-HD_dimer 9.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01103 - - gmx:100776421 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01103 05 28201649 28203308 Cca05g01103 05 28201649 28203308 ECH
Cca05g01103 05 28201649 28203308 Cca03g01315 03 30920462 30921732 PCT