Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01097 ATGGTGAATGCGATGAAGAAGAAACGAAAAGAAAGCGAGGTCTCGCGGTCGATCATGCCGGAGATTTCGCAGTCGCATTACTCGCTGGAGCGTTGTTCTCGTTTCAACAAACGGTGCAGGGAAGACGGCGTGGCCACGGTTCCGCCTCGCGGCGCGCCGTTACTTCTGACGCCGTCGAGGGGGCTGAAGCGGAAGATAGGGTGCATTGAGAACGCCACGCAGATGGGGAAGAGCGGGAGGATCGAGGACTATTACGTGACCGGCGGCGGCACGCTCGGGAGGGGGAAGTTCGGGTCGGTGGCGGTGTGTCGCGCACGTGCGGGGGGCGTGGAGTACGCGTGCAAAACGCTGAGGAAGGGGGAGGAGACGGTGCACCGGGAGGTGGAGATAATGCAGCACGTGTCGGGGCACCCTGGGGTGGTGACACTCGAGGCGGTGTACGAGGATGCGGAGAGCTGGCACCTTGTGATGGAGTTGTGTTCCGGGGGGAGATTGGTTGATAAGATGAGAGAGGGTCCTTGTTCGGAACACTTGGCTGCTGGGATACTCAAGGAGGTGATGCTGGTGGTTAAGTATTGCCATGATATGGGGGTGGTGCATAGGGATATTAAGCCGGAGAATATTCTGATCACCGGCTACGGGAAACTCAAGCTCGCGGATTTTGGTCTTGCCATCAGGATTTCTGAGGGTCAGAATTTGACAGGTGTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTCGGGTGGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTGGTCTTCCATTTAAAGGAGATTCTCCGGAAGCAGTTTTTGAGGAAATTAAGAATGTCAAATTAGATTTCCAAACAGGGGTATGGGAATCAATATCTAAACCTGCAAGAGATCTTCTTGGGAGAATGCTGACAAGGGATGTTTCGGCAAGGATAACTGCTGATGAAGTACTTGGGCATCCATGGATATTGTTCTACACTGAGCGCACGTTGAAGATGGTGCCTGTTAAATCAAAATTGAAATTCCAAAATGCAGCCGCTTGCCACAAGTTGGTTGCATCACCTGAATCTGGGTCAGGAGGAAACAAGAAAGGCGACGGCTCCCTTAATGAAGGTTCAAGCTCGTTCTCATCCTCTGAGAGTTGCAATTCAGAATATCGTGATGACTGTGGGTGGATTGATGCACTTGCCACTGCAGTTTCACGTGTGACCATATCGGAACCAAAGAGGACCAAGTTGTGGTCTCCCACTGCTCCAATTGATCAGCAGGGTTCATCTAACATGAAGACTAGCCTCTGTAAAGCATTCTGA 1341 0.5227 MVNAMKKKRKESEVSRSIMPEISQSHYSLERCSRFNKRCREDGVATVPPRGAPLLLTPSRGLKRKIGCIENATQMGKSGRIEDYYVTGGGTLGRGKFGSVAVCRARAGGVEYACKTLRKGEETVHREVEIMQHVSGHPGVVTLEAVYEDAESWHLVMELCSGGRLVDKMREGPCSEHLAAGILKEVMLVVKYCHDMGVVHRDIKPENILITGYGKLKLADFGLAIRISEGQNLTGVAGSPAYVAPEVLSGGYSEKVDIWSSGVLLHALLVGGLPFKGDSPEAVFEEIKNVKLDFQTGVWESISKPARDLLGRMLTRDVSARITADEVLGHPWILFYTERTLKMVPVKSKLKFQNAAACHKLVASPESGSGGNKKGDGSLNEGSSSFSSSESCNSEYRDDCGWIDALATAVSRVTISEPKRTKLWSPTAPIDQQGSSNMKTSLCKAF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01097 446 SUPERFAMILY Protein kinase-like (PK-like) 89 354 IPR011009 -
Cca05g01097 446 SMART serkin_6 86 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01097 446 MobiDBLite consensus disorder prediction 363 391 - -
Cca05g01097 446 CDD STKc_CAMK 89 332 - -
Cca05g01097 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cca05g01097 446 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 18 439 - -
Cca05g01097 446 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Cca05g01097 446 MobiDBLite consensus disorder prediction 371 391 - -
Cca05g01097 446 MobiDBLite consensus disorder prediction 424 446 - -
Cca05g01097 446 Pfam Protein kinase domain 90 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01097 446 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 439 - -
Cca05g01097 446 Gene3D Transferase(Phosphotransferase) domain 1 166 366 - -
Cca05g01097 446 Gene3D Phosphorylase Kinase; domain 1 89 165 - -
Cca05g01097 446 ProSiteProfiles Protein kinase domain profile. 86 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01097 Cca-Chr5 28072212 28076058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01097 77 333 EF-hand Containing Proteins AT2G35890 44.776 2.41e-74 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca05g01097 Pkinase 2.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01097 - - gmx:100801753 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01097 05 28072212 28076058 Cca05g01097 05 28072212 28076058 ECH
Cca05g01097 05 28072212 28076058 Cca03g01281 03 30341018 30344790 PCT