Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01092 ATGGGCATCCACACCGAATGCCCTGCACCTCCACTACCTCTACTGTTCATGAATCTCCATCATGctcctgcttcttcccttcttctacttcttattctCGCGCCACCGGTCACGGCACAGTTCCAGAACGcgccgccgccgccgccgTTGGACCCTTTCACGAGGCTAAGGTTCGACAGGACCATGGCCGCTGTCTTGGTAGTCCTCGTCGTGGTTTTCTTCGCGTTGGGATTCGTGTCGATCTACACTCGCCAATGCGCCGAGCGGAGAGTCCGAGGGAGGCTCGACCTCGCCGTGGCCATCGCCGGCGGCATGGAGCGGCGCCAGCAACGCGGCCTCGACCCGGAGATCGTCGACACGTTCCCCACCTTCGTGTACTCCGAGGTAAAGGCCCTCAAGATCGGAAGGGCCACGCTGGAATGCGCCGTGTGCCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCCAAGTGCTGCCACGTGTTCCACCCCGATTGTATCGACGCTTGGTTGGTGAATCACTCCACGTGCCCCGTGTGCCGCGCCAACCTCGCGCCCAAGCCCGAGGACGCGCCTCCTTCCGTCGCGATTCAGGTTCCAGATCCGGCCCAGCCCAATAGGCCCAACGCGGAATATGATCCGAATTCGATTAGCCCGGTCGAAGACGgtcaacctgaacgtgaacgtgaacgtgaagggaacAGAATAGTTACACTTACAGAACCTCTCACTCCCTGTGGTAATAATTTAGCTGATTTGAATCGGCCGGTTCGGTCTCGTTCGACCGGCTTTGGGAGATTGTTTCCGCGTTCTCATTCAACGGGTCATTCGTTGGTTCGACCTGGGGAGGACTTCGACCGGTACACGCTGCGGTTGCCGGAGGAAGTACGGAACCGGCTCGTGAGTACGGCGGCGCTGAGCCGGACGAAGAGTTGCGGGGTGACGTGGCAGCGAGAGAGCAGTGGGAGGAGGGGTTACCGGACGAGGAGTGTTGGGAGGAATTACCTACAGTATGAGCGGTTCGGTGGGGAGGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCATTTTGGGGTAGAACCGGTTCACTGAGGTCAACGAAGGACTTGGGAGAACGTTCTTCTGATCGTTTATTTTCCAAGGACTGA 1158 0.5492 MGIHTECPAPPLPLLFMNLHHAPASSLLLLLILAPPVTAQFQNAPPPPPLDPFTRLRFDRTMAAVLVVLVVVFFALGFVSIYTRQCAERRVRGRLDLAVAIAGGMERRQQRGLDPEIVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPPSVAIQVPDPAQPNRPNAEYDPNSISPVEDGQPEREREREGNRIVTLTEPLTPCGNNLADLNRPVRSRSTGFGRLFPRSHSTGHSLVRPGEDFDRYTLRLPEEVRNRLVSTAALSRTKSCGVTWQRESSGRRGYRTRSVGRNYLQYERFGGEGRLDRWGFMWTPPFWGRTGSLRSTKDLGERSSDRLFSKD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01092 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 189 IPR013083 -
Cca05g01092 385 MobiDBLite consensus disorder prediction 193 235 - -
Cca05g01092 385 SUPERFAMILY RING/U-box 125 197 - -
Cca05g01092 385 CDD RING-H2_PA-TM-RING 140 183 - -
Cca05g01092 385 Pfam Ring finger domain 140 183 IPR001841 -
Cca05g01092 385 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Cca05g01092 385 PANTHER RING-H2 FINGER PROTEIN ATL11 28 321 - -
Cca05g01092 385 SMART ring_2 141 182 IPR001841 -
Cca05g01092 385 PANTHER RING FINGER DOMAIN-CONTAINING 28 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01092 Cca-Chr5 27925725 27927284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01092 27 385 Rapid Response to Elicitors AT3G05200 39.523 5.03e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01092 K10664 - gmx:100815982 521.931