Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01091 ATGGCCTCGATCTTGGCCTCGGAAGCGAGCATGCACCACGAGTTCCATAAGAGGGATTTTCTGACGAGCTTGGCGCGGAGAGCGACGAGGAAGAGAATGTGGTTGGGGTTAAAGACGGGATTGAGGACTTGGAGGATGAcaaaaagaatccgtcacaatttgcgaCAATCGCAGACACGTGGCAACAGGCTCGACCTCGCCGCTCCTACCGGCGCAGGCGGTAACCCGTCGAATGCCGAATCCAACGGCCTCGACCAAGCCACCATAGAAACCTTCCCCACGTTCCTCTACTCCGACGTGAAGGGTCTCAAAATCGGAAACGACACGCTGGCATGCGCCGTGTGCTTGAACGAGTTCCAAGACGAGGAAACCCTCCGCATGATCCCCAAGTGCTGCCACGTGTACCACTCCGATTGCATCGACGTTTGGTTAGCCTCCCACTCCACGTGCCCGGTTTGTCGCGCCAACCTCGTTCCACAACCCGAAGACATAAACATGCCTCCGATGTTGTCCATTCAGATACCCGatgatgaggaacgtgaccacgaacatgaacatcaaagtgaacatgacatTAGTGAAGAACATAAGAGAGAGAGTGACGCGGAATCACCAATGGTGGACTTGCTTCGTAGGGTTCGCTCGTTGCATCAGAGCCGTCCATCATTGTCGAGATCAACGGGGTTTCTATCTTCGCTTTTGTTTCCGCGGTCGAACTCGTTGGGTCAATTGGTGCAGCCTGGGGAGAACTATGAGAGGTTTACGCTACGGTTACCCGAGGAGGTACGAAGCCAGATGATGAACTCGACGCTGAAGCGTGCGAAGAGTTGCGTGTGCTTTACGAGAATGAGCAGTGACACGCGGGGGTATAGGACGAGAAGCGTGGGAAGTGGACGTGGGAGAGGGTGTGTGCAGTATGAGAGGTTTGGTGGTGAGGTACAGTGGGGTTTCCCTTTGACGCCACCGAGTCTCGTTAGGAATAACGGTTGGAACAGATCCATGAAAAAATCACAGGTTCAGCGTTCGGGTGTGGCTTTCGATAATAATCTTGCTGGTGAACGATCCTCTGATTTCTTGCGTCTTGCTCCATAG 1092 0.5055 MASILASEASMHHEFHKRDFLTSLARRATRKRMWLGLKTGLRTWRMTKRIRHNLRQSQTRGNRLDLAAPTGAGGNPSNAESNGLDQATIETFPTFLYSDVKGLKIGNDTLACAVCLNEFQDEETLRMIPKCCHVYHSDCIDVWLASHSTCPVCRANLVPQPEDINMPPMLSIQIPDDEERDHEHEHQSEHDISEEHKRESDAESPMVDLLRRVRSLHQSRPSLSRSTGFLSSLLFPRSNSLGQLVQPGENYERFTLRLPEEVRSQMMNSTLKRAKSCVCFTRMSSDTRGYRTRSVGSGRGRGCVQYERFGGEVQWGFPLTPPSLVRNNGWNRSMKKSQVQRSGVAFDNNLAGERSSDFLRLAP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01091 363 CDD RING-H2_PA-TM-RING 112 154 - -
Cca05g01091 363 Pfam Ring finger domain 111 154 IPR001841 -
Cca05g01091 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 159 IPR013083 -
Cca05g01091 363 MobiDBLite consensus disorder prediction 177 205 - -
Cca05g01091 363 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Cca05g01091 363 PANTHER RING FINGER DOMAIN-CONTAINING 55 298 - -
Cca05g01091 363 MobiDBLite consensus disorder prediction 58 83 - -
Cca05g01091 363 SMART ring_2 112 153 IPR001841 -
Cca05g01091 363 SUPERFAMILY RING/U-box 106 171 - -
Cca05g01091 363 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 55 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01091 Cca-Chr5 27899342 27901660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01091 83 270 Rapid Response to Elicitors AT2G35000 45.128 9.11e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01091 K10664 - gmx:100814384 419.083