Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01090 ATGGCAATCGTCGCCGCCATGTTCCTCATCTCAGCCGTCCTCTCTCTCTACTCTCGCAAATGCTCCGACCGGCAATCGCAGACACGTGGCAACAGGCTCGACCTCGCCGCTCCTACCGGCGCAGGCGGTAACCCGTCGAATGCCGAATCCAACGGCCTCGACCAAGCCACCATAGAAACCTTCCCCACGTTCCTCTACTCCGACGTGAAGGGTCTCAAAATCGGAAACGACACGCTGGCATGCGCCGTGTGCTTGAACGAGTTCCAAGACGAGGAAACCCTCCGCATGATCCCCAAGTGCTGCCACGTGTACCACTCCGATTGCATCGACGTTTGGTTAGCCTCCCACTCCACGTGCCCGGTTTGTCGCGCCAACCTCGTTCCACAACCCGAAGACATAAACATGCCTCCGATGTTGTCCATTCAGATACCCGatgatgaggaacgtgaccacgaacatgaacatcaaagtgaacatgacatTAGTGAAGAACATAAGAGAGAGAGTGACGCGGAATCACCAATGGTGGACTTGCTTCGTAGGGTTCGCTCGTTGCATCAGAGCCGTCCATCATTGTCGAGATCAACGGGGTTTCTATCTTCGCTTTTGTTTCCGCGGTCGAACTCGTTGGGTCAATTGGTGCAGCCTGGGGAGAACTATGAGAGGTTTACGCTACGGTTACCCGAGGAGGTACGAAGCCAGATGATGAACTCGACGCTGAAGCGTGCGAAGAGTTGCGTGTGCTTTACGAGAATGAGCAGTGACACGCGGGGGTATAGGACGAGAAGCGTGGGAAGTGGACGTGGGAGAGGGTGTGTGCAGTATGAGAGGTTTGGTGGTGAGGTACAGTGGGGTTTCCCTTTGACGCCACCGAGTCTCGTTAGGAATAACGGTTGGAACAGATCCATGAAAAAATCACAGGTTCAGCGTTCGGGTGTGGCTTTCGATAATAATCTTGCTGGTGAACGATCCTCTGATTTCTTGCGTCTTGCTCCATAG 999 0.5185 MAIVAAMFLISAVLSLYSRKCSDRQSQTRGNRLDLAAPTGAGGNPSNAESNGLDQATIETFPTFLYSDVKGLKIGNDTLACAVCLNEFQDEETLRMIPKCCHVYHSDCIDVWLASHSTCPVCRANLVPQPEDINMPPMLSIQIPDDEERDHEHEHQSEHDISEEHKRESDAESPMVDLLRRVRSLHQSRPSLSRSTGFLSSLLFPRSNSLGQLVQPGENYERFTLRLPEEVRSQMMNSTLKRAKSCVCFTRMSSDTRGYRTRSVGSGRGRGCVQYERFGGEVQWGFPLTPPSLVRNNGWNRSMKKSQVQRSGVAFDNNLAGERSSDFLRLAP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01090 332 MobiDBLite consensus disorder prediction 146 174 - -
Cca05g01090 332 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Cca05g01090 332 MobiDBLite consensus disorder prediction 33 52 - -
Cca05g01090 332 PANTHER RING FINGER DOMAIN-CONTAINING 1 268 - -
Cca05g01090 332 Pfam Ring finger domain 80 123 IPR001841 -
Cca05g01090 332 SUPERFAMILY RING/U-box 75 140 - -
Cca05g01090 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 128 IPR013083 -
Cca05g01090 332 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 268 - -
Cca05g01090 332 CDD RING-H2_PA-TM-RING 81 123 - -
Cca05g01090 332 SMART ring_2 81 122 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01090 Cca-Chr5 27896927 27897925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01090 1 239 Rapid Response to Elicitors AT2G35000 38.645 5.49e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01090 K10664 - gmx:100814384 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01090 05 27896927 27897925 Cca05g01090 05 27896927 27897925 ECH
Cca05g01090 05 27896927 27897925 Cca03g01270 03 30168964 30174095 PCT