Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01089 ATGAGCATGCAAAAGGAGAGTCCTCTAGTGAGACTCCGAATTTTTTACCAAAGCCATGCATGGCTCCCTCTATTGCACCTTCTCATTCATATCTCACCGCCAGTAACCGGTCAACCGGTAACACCAGTGGAACCCGACAGCAACAAATCCGTGGTCACAATCATGGCAATCGTCGCCGCCATGTTCCTCATCTCAGCCGTCCTCTCTCTCTACTCTCGCAAATGCTCCGACCGGCAATCGCAGACACGTGGCAACAGGCTCGACCTCGCCGCTCCTACCGGCGCAGGCGGTAACCCGTCGAATGCCGAATCCAACGGCCTCGACCAAGCCACCATAGAAACCTTCCCCACGTTCCTCTACTCCGACGTGAAGGGTCTCAAAATCGGAAACGACACGCTGGCATGCGCCGTGTGCTTGAACGAGTTCCAAGACGAGGAAACCCTCCGCATGATCCCCAAGTGCTGCCACGTGTACCACTCCGATTGCATCGACGTTTGGTTAGCCTCCCACTCCACGTGCCCGGTTTGTCGCGCCAACCTCGTTCCACAACCCGAAGACATAAACATGCCTCCGATGTTGTCCATTCAGATACCCGatgatgaggaacgtgaccacgaacatgaacatcaaagtgaacatgacatTAGTGAAGAACATAAGAGAGAGAGTGACGCGGAATCACCAATGGTGGACTTGCTTCGTAGGGTTCGCTCGTTGCATCAGAGCCGTCCATCATTGTCGAGATCAACGGGGTTTCTATCTTCGCTTTTGTTTCCGCGGTCGAACTCGTTGGGTCAATTGGTGCAGCCTGGGGAGAACTATGAGAGGTTTACGCTACGGTTACCCGAGGAGGTACGAAGCCAGATGATGAACTCGACGCTGAAGCGTGCGAAGAGTTGCGTGTGCTTTACGAGAATGAGCAGTGACACGCGGGGGTATAGGACGAGAAGCGTGGGAAGTGGACGTGGGAGAGGGTGTGTGCAGTATGAGAGGTTTGGTGGTGAGGTACAGTGGGGTTTCCCTTTGACGCCACCGAGTCTCGTTAGGAATAACGGTTGGAACAGATCCATGAAAAAATCACAGGTTCAGCGTTCGGGTGTGGCTTTCGATAATAATCTTGCTGGTGAACGATCCTCTGATTTCTTGCGTCTTGCTCCATAG 1161 0.5142 MSMQKESPLVRLRIFYQSHAWLPLLHLLIHISPPVTGQPVTPVEPDSNKSVVTIMAIVAAMFLISAVLSLYSRKCSDRQSQTRGNRLDLAAPTGAGGNPSNAESNGLDQATIETFPTFLYSDVKGLKIGNDTLACAVCLNEFQDEETLRMIPKCCHVYHSDCIDVWLASHSTCPVCRANLVPQPEDINMPPMLSIQIPDDEERDHEHEHQSEHDISEEHKRESDAESPMVDLLRRVRSLHQSRPSLSRSTGFLSSLLFPRSNSLGQLVQPGENYERFTLRLPEEVRSQMMNSTLKRAKSCVCFTRMSSDTRGYRTRSVGSGRGRGCVQYERFGGEVQWGFPLTPPSLVRNNGWNRSMKKSQVQRSGVAFDNNLAGERSSDFLRLAP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01089 386 CDD RING-H2_EL5_like 135 177 - -
Cca05g01089 386 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Cca05g01089 386 MobiDBLite consensus disorder prediction 82 106 - -
Cca05g01089 386 Pfam Ring finger domain 134 177 IPR001841 -
Cca05g01089 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Cca05g01089 386 SMART ring_2 135 176 IPR001841 -
Cca05g01089 386 PANTHER RING FINGER DOMAIN-CONTAINING 1 321 - -
Cca05g01089 386 SUPERFAMILY RING/U-box 129 194 - -
Cca05g01089 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 321 - -
Cca05g01089 386 MobiDBLite consensus disorder prediction 200 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01089 Cca-Chr5 27891528 27893301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01089 54 293 Rapid Response to Elicitors AT2G35000 38.492 8.06e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01089 K10664 - gmx:100814384 535.798