Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01087 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACAATTGCAAAGACTACTTGTACTCTTTAATAGGAGGGGGAACCATAGACCACACCCTGCATGCAAATTGGGATTCATCTTCTCCTTCGCTCTTGCAAAATGTCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCATGCACCGTCGATCATTCCCACCCCGGACCTTTCcctcctcctcctccttcctccGCGGAAGCCGCCACCGGCCGCCGCAAACGACGCCGTACCAAGAGCGCCAAGAACAAGGAGGAGATCGAGAATCAGAGGATGACCCACATTGCAGTTGAGCGCAATAGAAGGAAACAGATGAACGAGTACCTCGCTGTGCTTAGATCTTTGATGCCTCCTTCTTATGTTCAAAGGGGTGATCAAGCCTCTATTATTGGTGGTGCGATTAACTTCGTGAAGGAGTTAGAGCAGCTTCTGCAGTGCATGAAGTGCCAAAAGAGAGCACAGGAGCAAGGGCAGGTGAATGGCTTCTCTGACTCTGTCTCACCCCCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCCACACGTGCGACGCATAACACTAGAGGCTACCCTGGCACGTGCGAGGCCAACATGACGCGGAACCACTCATGGGCCGTCGCGGATATTGAAGTGACCTTGGTGGATGGGCATGCCAACATAAAGATACTCTCCAAGAAACAACCCGGGTTGCTTCTGAAGATGGTTATTGGGCTTCAAAGTCTTGGCTTCGGGATTCTTCACCTTAATGTCACCACTGTTGATGATATGGTCCTTACTTCAGTTAGTGTTAAGGTAGAAGAGGGGTGTCAGCTGAACACGGTGGATGATATTGCAGCTGCTGTGCATCAATTATCACGCACGGTCCAGGAGGAAGCTGTTTTCAGCTGA 930 0.4935 MALEAVVFPQDPFTYNCKDYLYSLIGGGTIDHTLHANWDSSSPSLLQNVKDQWDSHSSPEPCTVDHSHPGPFPPPPPSSAEAATGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKCQKRAQEQGQVNGFSDSVSPPFAEFFMFPQYSTRATHNTRGYPGTCEANMTRNHSWAVADIEVTLVDGHANIKILSKKQPGLLLKMVIGLQSLGFGILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDDIAAAVHQLSRTVQEEAVFS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01087 309 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 308 - -
Cca05g01087 309 Pfam Helix-loop-helix DNA-binding domain 104 155 IPR011598 GO:0046983
Cca05g01087 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983
Cca05g01087 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 171 IPR036638 GO:0046983
Cca05g01087 309 MobiDBLite consensus disorder prediction 49 101 - -
Cca05g01087 309 SMART finulus 109 160 IPR011598 GO:0046983
Cca05g01087 309 CDD bHLH_AtFAMA_like 106 173 - -
Cca05g01087 309 Coils Coil 151 171 - -
Cca05g01087 309 PANTHER MAX DIMERIZATION, MAD 1 308 - -
Cca05g01087 309 MobiDBLite consensus disorder prediction 66 80 - -
Cca05g01087 309 Gene3D - 93 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01087 Cca-Chr5 27861660 27864911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01087 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.677 1.05e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g01087 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01087 - - ccaj:109795426 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01087 05 27861660 27864911 Cca05g01087 05 27861660 27864911 ECH
Cca05g01087 05 27861660 27864911 Cca03g01267 03 30066309 30067916 PCT