Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01086 ATGGCTACCAAACACAGAAAACTCTTCCCCGATGAACCAACAACAACCACAAACCAAACCCAAGATTGCTATGGCCTTTGCCACCCAGAGTGCCCTTACAACTGTTACCCCAACCAAGACTTCTTCTTCTCTCCACCACCACCCTCCCTTTCAGAACATTCAAACCAAGTCAGCCACATATCCTCGTACTTGGTCATCCTCGTGACGCTATTCGCCGTCATTTTTGTCGTGGTGGGTTTCTACGTGATCAAAGTGAAGTGCTACGCTGCATGGTGTGGCTGGCGAGTCAACGGTTCCGTTCCCTCTCAATCCGACACCACCGAGGAGTTTCTCAACGAGAACCAAGTCGACCACCCCGTGTGGCTCATCGCCACGGTTGGGTTGCAACAATCGATCATTAACTCCATTACGGTGTGCAAGTACAAGAGAAACGAAGGGTTGGTCGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTCCAAGAAGAGGACACGTTAAGACTCTTGCCCAAGTGTAACCACGCCTTTCACGTCCCCTGTATTGACACGTGGCTCAGATCACACACCAATTGTCCCCTTTGTCGTGCTGGTATTGTCTCCAACAACAGTGTTACACCTCAAGCAGTTGTCTCCAATTTGGGTTCCACGGACCAAGAAAATGCAAACTTGGGAAGAATTCAAGAGACCCTTTTGGAGACTTCAAGGAATGAAGGTGGGCTAAGCATCAATGTTATCGAAACTGGTGCAGGGGAATCAAGTGAAGCACTAGAGTTGAATATTGATGAATCAAATTCTAAGGAACGGGTGAATGATCAAACAGAGATGGGGTCTGTTTCAATTGATCCTGTTTCGGTAATTGTGGATTCTTGTTCTACGGAATCTCAAAGCCATCATGTTGTTGATGATGATAAACATGATGACACAATTTTGGACACGGTTAATGGTGGTTACTTCTACTCAAAAACGTGTAAAACAATGCGTCGTTCGTCGATTGAAGAGTGTTTACACATGAGCCCGGTGTCTATGAAAAGGTCATTCTCCCGTTACGTGAATCTAAGCTCTAAACTCAATTCTTCCCTACTAGAGTTTTCAATTTGTTAG 1101 0.4596 MATKHRKLFPDEPTTTTNQTQDCYGLCHPECPYNCYPNQDFFFSPPPPSLSEHSNQVSHISSYLVILVTLFAVIFVVVGFYVIKVKCYAAWCGWRVNGSVPSQSDTTEEFLNENQVDHPVWLIATVGLQQSIINSITVCKYKRNEGLVEGTECSVCLNEFQEEDTLRLLPKCNHAFHVPCIDTWLRSHTNCPLCRAGIVSNNSVTPQAVVSNLGSTDQENANLGRIQETLLETSRNEGGLSINVIETGAGESSEALELNIDESNSKERVNDQTEMGSVSIDPVSVIVDSCSTESQSHHVVDDDKHDDTILDTVNGGYFYSKTCKTMRRSSIEECLHMSPVSMKRSFSRYVNLSSKLNSSLLEFSIC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01086 366 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Cca05g01086 366 SUPERFAMILY RING/U-box 144 204 - -
Cca05g01086 366 CDD RING-H2_PA-TM-RING 152 195 - -
Cca05g01086 366 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 356 IPR044675 -
Cca05g01086 366 SMART ring_2 153 194 IPR001841 -
Cca05g01086 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 203 IPR013083 -
Cca05g01086 366 Pfam Ring finger domain 152 195 IPR001841 -
Cca05g01086 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01086 Cca-Chr5 27846583 27848179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01086 4 207 C3H Transcription Factor Family AT1G72220 47.034 2.13e-62 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01086 - - gmx:100805705 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01086 05 27846583 27848179 Cca05g01086 05 27846583 27848179 ECH