Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01073 ATGGAGCGCTATGAGATTCTCAAAGATATTGGTTCTGGGAATTTCGCTGTGGCCAAGCTGGTCAAGGACAACTGCACAAATGAGCTTTTTGCAGTCAAGTTTATTGAGAGAGGCCAGAAGattgatgagcatgtccaaagggaaatcatgaaccatagatcattgaagcatcccaatattgttagattcaaagaggtcctgctgacaccaacacatctagccatagtaatggagtacgcttctggaggagaactctttgagaggatatgcaatgctggtagattcagtgaggatgaggcgagatttttctttcagcaattgatatcaggagtcagttactgtcattcaatgCAAATCTGTCACAGAGATCTGAAACTTGAAAACACACTCTTAGATGGAAGTACAGCACCGCGAGTCAAGATTTGTGACTTCGGTTACTCAAAGTCATCAGTATTGCATTCACAACCTAAGTCTACAGTAGGAACTCCAGCTTACATTGCACCTGAGGTTCTTACAAGGAAAGAATATGATGGGAAGATTGCAGATGTTTGGTCTTGTGGTGTCACCTTATATGTGATGTTAGTTGGTGCTTATCCTTTTGAAGACCCTGCAGATCCAAGAAACTTTAAAAAAACCCTTGGTAAAATACTTGGTGTCCAGTACTCAGTCCCTGATTATGTACGAGTTTCCTTGGAGTGTAGAAATCTTCTATCACAAATATTTGTGGCCAGCCCGGAAAAGAGAATAACAATACCAGAAATTAAAAACCATCCATGGTTTTTAAGGAACTTGCCCATAGAACTGATGGAAGGTGGAAGCTGGCAAATGAATGATGTAAATAATCCATCACAAAGTGTTGATGAAGTCCTGTCTATTATACAAGAGGCAAGAAAATGTCTCAGTATTCCCAGTGTTGGTGGCCTTCTTATTGGAGGCAGCATGGACCTGGATGACTTGGATTGTGATGCTGATCTTGAAGACATTGAAACAAGCGGTGAATTTGTGTGTCCTATTTAA 1017 0.3156 MERYEILKDIGSGNFAVAKLVKDNCTNELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPADPRNFKKTLGKILGVQYSVPDYVRVSLECRNLLSQIFVASPEKRITIPEIKNHPWFLRNLPIELMEGGSWQMNDVNNPSQSVDEVLSIIQEARKCLSIPSVGGLLIGGSMDLDDLDCDADLEDIETSGEFVCPI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01073 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Cca05g01073 338 SUPERFAMILY Protein kinase-like (PK-like) 2 270 IPR011009 -
Cca05g01073 338 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 332 - -
Cca05g01073 338 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01073 338 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01073 338 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Cca05g01073 338 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01073 338 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Cca05g01073 338 CDD STKc_SnRK2 3 259 - -
Cca05g01073 338 PANTHER SERINE/THREONINE KINASE 2 332 - -
Cca05g01073 338 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01073 Cca-Chr5 27616718 27620300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01073 3 279 CBL-interacting serine-threonine protein kinases AT4G24400 41.958 3.48e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Cca05g01073 Pkinase 6.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01073 K14498 - gmx:100793276 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01073 05 27616718 27620300 Cca05g01073 05 27616718 27620300 ECH