Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01066 ATGAATCAAAACCAGCTTCAGCCTCTGCCTCTGCTGAGTAGCTTCCTTGGTTCATCTCCACGAGAGGCTTTGCTCCAAAACCAAAATCATAAAGCATGTGAGGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACAATTCAAGTGGCTCCACCACCAACAATCATGGATTTGTGAGTGACACAACTCAAGTTCCTAACAATTACTGGATACCAACTCAGGAGCAGATCCTCATCGGGTTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAACAACCTTCAGATGCACATGTGGGGACACGGTTCGCAGTACCGTAGAGGACCAGACTCGCTGAAGCGAACTCATCCACGACCGTTGTTAGACATTCCATGCTATTGTTGCGCAAGAGGGTGCAAGAACAACATTGAGCACCCACGAGCCAAGCCTCTGAAGGATTTTCGAACGCTTCAAACACACTACAAGAGGAAGCACGGGTCGAAGCCCTTCACGTGTCGCAAGTGTGGGAAGCCCTTGGCTGTGAAAGGTGACTGGAGAACGCACGAGAAGAACTGTGGCAAACGCTGGCTTTGTATCTGTGGCTCAGACTTCAAACATAAGAGGTCGCTTAAGGATCACATCAAAGCCTTTGGATTTGGTCATAGCCCTTTTTCTTCTTCTTCTGAAGCCGTGTGA 690 0.4884 MNQNQLQPLPLLSSFLGSSPREALLQNQNHKACEDVTVALHIGLPDNSSGSTTNNHGFVSDTTQVPNNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCARGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSEAV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01066 229 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Cca05g01066 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Cca05g01066 229 Gene3D Classic Zinc Finger 164 221 - -
Cca05g01066 229 SUPERFAMILY beta-beta-alpha zinc fingers 79 106 IPR036236 -
Cca05g01066 229 SUPERFAMILY beta-beta-alpha zinc fingers 153 188 IPR036236 -
Cca05g01066 229 PANTHER ZINC FINGER PROTEIN WIP2 5 223 IPR043584 GO:0003700|GO:0010468
Cca05g01066 229 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 223 - -
Cca05g01066 229 Pfam Zinc finger, C2H2 type 84 103 IPR013087 -
Cca05g01066 229 Gene3D Classic Zinc Finger 83 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01066 Cca-Chr5 27466954 27468632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01066 36 224 C2H2 Transcription Factor Family AT1G34790 67.488 2.46e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g01066 zf-C2H2 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01066 - - gmx:547675 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01066 05 27466954 27468632 Cca05g01066 05 27466954 27468632 ECH