Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01065 ATGGCTTACCCACATTACCGATCGCAGTTCGGAGACACAACGTTCACTAAGGTCTTTGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAATGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTTGGGAGGCCTAGACCATCACCACCTAGAGGAAGGGGTACATTCCAAGGAGGAGCGGGAACGGCGTCGTACGGTGGCGTTCCGGCGGGAGGAGGAGCGGCACTTGCGCCGCCGCCACCACCGCTAGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCACCATATTACTATGGCTATTCTGTGCAAGCACCAAGAGGCACATTTTCTACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCCATGGAAGCCTCATTCCCTGCATTTCGTCCACCACCTCAATTGCAACAACTAGCAATAAGGCACCCCCCTCCTTCCCCTAGTGGTACTTTTCTTTTCACTTCTCTAACAAATTCATTTAATAAACATACATTATCAACTAATCAGAAATCTTTTAAAGTTATTATCACATTTTGTAAGTAG 822 0.4659 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPMIDGRRANCNIASLGRPRPSPPRGRGTFQGGAGTASYGGVPAGGGAALAPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSTPQPHRIPAGPSYLYYPTPMEASFPAFRPPPQLQQLAIRHPPPSPSGTFLFTSLTNSFNKHTLSTNQKSFKVIITFCK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01065 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Cca05g01065 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Cca05g01065 273 Gene3D - 3 113 IPR012677 -
Cca05g01065 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Cca05g01065 273 PANTHER GEO13361P1-RELATED 1 242 - -
Cca05g01065 273 MobiDBLite consensus disorder prediction 92 115 - -
Cca05g01065 273 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Cca05g01065 273 PANTHER - 1 242 - -
Cca05g01065 273 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01065 Cca-Chr5 27455131 27460171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01065 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 6.02e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01065 K25006 - gmx:100788516 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01065 05 27455131 27460171 Cca05g01065 05 27455131 27460171 ECH
Cca05g01065 05 27455131 27460171 Cca03g01244 03 29686077 29689449 PCT