Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01061 ATGGCTGATTCACTATCTGTTAACGTTGATTCTTCATTCAAGTCTGAATTTTCCACTGAACAAAAACGCATAAGTACCCAAGAGGCTCAATACTCTCCATCTAACATCCAAAAGGCTATTGCTGAGGTGGTTGGTACATACATTCTTATATTTGCAGGCTGTGGAGCCGCTCTTGTTAATGAGAAATTGCCAATTACAATATTAGGCATAGCAATTGTTTCGGGTCTGGCTCTCACGGTGGCTATATATTCTGTTGGTCATGTCTCTGGTGGTCATTTCAATCCTGCAGTTACAGTTGCTTTGGCTGCTGTTAGAAAAGTTCATTGGAAACTTGTGCCTGTTTATGTGTTGTGCCAGATGATGGGTGCTACACTGGCCCCTCTCACCCTCAAAGTGTTGTATCATGACAAGGTGGATATTGGAGTAACAGTAACTAAATACTTGAGCTCAACTTCTGATCTCGAAGCAATTGTGTGGGAATTCATAATCACTTTCATACTGATGCTCACCATTTGTGGTGTTGCTACTGATCACAGAGGGAGCAAAGATCTCACTGGAGTTGCGATAGGCATTGCTATTATAATTAACATCATTATTGCCGGGCCTATTACTGGAGCTTCAATGAATCCAGCAAGGAGTTTTGGCCCAGCTATCGTATCTGGTGATTACAAACACATTTGGGTTTATATCACAAGCCCAACTCTGGGAGCAGTCACCGCAAGTGCACTTTACAAATTGCTAGAAGTAACCAAACCAACTAAACCTGAACCATGTCATTGTAACATGTGCAATCATAACCATTTACCTTTATAA 813 0.4133 MADSLSVNVDSSFKSEFSTEQKRISTQEAQYSPSNIQKAIAEVVGTYILIFAGCGAALVNEKLPITILGIAIVSGLALTVAIYSVGHVSGGHFNPAVTVALAAVRKVHWKLVPVYVLCQMMGATLAPLTLKVLYHDKVDIGVTVTKYLSSTSDLEAIVWEFIITFILMLTICGVATDHRGSKDLTGVAIGIAIIINIIIAGPITGASMNPARSFGPAIVSGDYKHIWVYITSPTLGAVTASALYKLLEVTKPTKPEPCHCNMCNHNHLPL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01061 270 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 Gene3D Glycerol uptake facilitator protein. 3 257 IPR023271 -
Cca05g01061 270 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 CDD MIP 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 PANTHER MAJOR INTRINSIC PROTEIN 1 268 - -
Cca05g01061 270 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Cca05g01061 270 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Cca05g01061 270 TIGRFAM MIP: MIP family channel proteins 41 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01061 270 SUPERFAMILY Aquaporin-like 31 255 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01061 Cca-Chr5 27390232 27391762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01061 32 254 Major Intrinsic Protein MIP AT5G37810 47.845 3.15e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01061 K09874 - gmx:100798380 450.669