Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01049 ATGACGAACAAGAATATTGTGGTGGCTCCTATTGGGAAATCATCACGTGTTAATAACACGCTTGTGGAGTTAGCAATGTCGATTTCAAACTCAAATGCTCTACCTAGAGCCGCAGTGCCCAGAATAATGGCCTTGTTTGGTGGGGTTTTGGGCTTAGGCCTACCCCAGAAAAAGCTCTTAATCAAAGATGGGACCAAAGTTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACTCGAGTCAAATCCACGCAACAAAACCAAGACCCCATTAGTCCTTGGACTCTTTACCACCCTTCGGCACTGAACATGTTGGATCAGATTGTGTGTGACTCCAAAGGGAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGACTAAAAAGATGAGGGCCACGTTAAAGGACCTAGCAAGGCATTTCCCCACCGCCATCGTCAGTGGAAGGTGCATAGACAAGGTGTATAGTTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGGATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGGAAATGAAGAAGTGCTATTGCAACCCGCGAGTGAATTCTTACCCATGATCAATGAGGTGTACAATATCCTGGTGGAAAAAACAAAGTCTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAATTGGGTCGCATTGGCTGAACAAGTTAGCTTGGTGCTCGATGAGTACCCAAAACTAAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATACGACCTACCATAAAATGGGACAAGGGCAAGGCTCTGGAATTCTTGCTAGAGTCACTAGGATATGCTAATTCTGATAATGTATTTCCAGTCTATATTGGAGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGGAGAAGGGGCCAAGGGGTTGGGATTCTTGTTTCTAAAATTCCAAAGGAAACCAATGCTTCCTACACTTTGAAAGATCCAACAGAGGTTGGGCAGTTTTTGCGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACTAG 1125 0.4444 MTNKNIVVAPIGKSSRVNNTLVELAMSISNSNALPRAAVPRIMALFGGVLGLGLPQKKLLIKDGTKVNTWIDSMRASSPTRVKSTQQNQDPISPWTLYHPSALNMLDQIVCDSKGKQIVTFLDYDGTLSPIVADPDKAYMTKKMRATLKDLARHFPTAIVSGRCIDKVYSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNEEVLLQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKNWVALAEQVSLVLDEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPVYIGDDRTDEDAFKVLRRRGQGVGILVSKIPKETNASYTLKDPTEVGQFLRHLVEWKRTSSQYH 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01049 374 Gene3D - 118 204 IPR023214 -
Cca05g01049 374 Gene3D - 223 374 IPR023214 -
Cca05g01049 374 TIGRFAM T6PP: trehalose-phosphatase 116 364 IPR003337 GO:0003824|GO:0005992
Cca05g01049 374 SUPERFAMILY HAD-like 121 367 IPR036412 -
Cca05g01049 374 CDD HAD_TPP 121 357 - -
Cca05g01049 374 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 13 374 - -
Cca05g01049 374 Pfam Trehalose-phosphatase 121 353 IPR003337 GO:0003824|GO:0005992
Cca05g01049 374 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 121 329 IPR006379 -
Cca05g01049 374 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 13 374 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01049 Cca-Chr5 27183868 27186584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01049 109 371 Trehalose Biosynthesis Gene Families AT1G06410 26.165 5.83e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01049 K01087 - gmx:100792915 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01049 05 27183868 27186584 Cca05g01049 05 27183868 27186584 ECH
Cca05g01049 05 27183868 27186584 Cca03g01221 03 29001016 29003804 PCT