Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01045 ATGAATTTCTACAACGCAGCACAAGATCCATTCCGAGcttcagcttcagcttcagcttcaCTCCCTCCACACCCCAATTTCTACGCAGACACCTCCTCCTACCTATTCCCCACAGCCACAGGGTTTTCCTCATCATCTCAAACCCAAACCTTAATCGGCTTCCAGCAGCCAAGTGCTGCGCTGGGGCTGAACCACCTAAGCCCGTTTCAGGTTTCGCAGATCCAGAGTCCCTCACCCTCCCTGAGCTTGCTGGGCCCGAAGGCCGTCCCGATGAAGCAAGTGGGCGCGCCTCCCAAGCCCACGAAGCTGTACCGGGGCGTGAGGCAGAGGCATTGGGGGAAGTGGGTGGCTGAAATCAGACTCCCGAAGAACCGAACGAGGCTTTGGCTGGGGACTTTCGACACCGCGGAGGAAGCAGCTTTGGCGTACGACAAGGCCGCGTATAGACTCCGAGGCGACTTCGCGAGGCTGAACTTCCCGAACCTGAAAGGGTCGTGTGTGGGCGAGTACAAGCCTCTGCAGTCGGCGGTTGATGCCAAACTGGACGCCATTTGTCAGAACCTGGCTGAAATGCAGAAGCAGGGAAAGGCTGAGAAGGGTGGCAGGTCAGCCAAAAAGTCTAAGCTTGGTAAGGAGCCTCCCAACCCCAACCTGGACCTTTCCTCAGTTTCCTGCAAGGCCGAACCTTCCGCTTCCAGTGAGGGCTCTGCGGGTTCTTCTCCTTTGTCTGATCTCACCTTCGATGTTACCGAGCCGCAATGGGAGGATCCTTCCGCACATTTTCATCTCCAGAAGTTTCCTTCTTACGAGATTGATTGGGATTCTCTCTGA 831 0.5475 MNFYNAAQDPFRASASASASLPPHPNFYADTSSYLFPTATGFSSSSQTQTLIGFQQPSAALGLNHLSPFQVSQIQSPSPSLSLLGPKAVPMKQVGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCVGEYKPLQSAVDAKLDAICQNLAEMQKQGKAEKGGRSAKKSKLGKEPPNPNLDLSSVSCKAEPSASSEGSAGSSPLSDLTFDVTEPQWEDPSAHFHLQKFPSYEIDWDSL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01045 276 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700|GO:0006355
Cca05g01045 276 Pfam AP2 domain 104 152 IPR001471 GO:0003700|GO:0006355
Cca05g01045 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 275 - -
Cca05g01045 276 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Cca05g01045 276 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Cca05g01045 276 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Cca05g01045 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 13 275 - -
Cca05g01045 276 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Cca05g01045 276 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Cca05g01045 276 MobiDBLite consensus disorder prediction 192 251 - -
Cca05g01045 276 MobiDBLite consensus disorder prediction 217 247 - -
Cca05g01045 276 MobiDBLite consensus disorder prediction 195 209 - -
Cca05g01045 276 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01045 Cca-Chr5 27146766 27147710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01045 20 276 AP2-EREBP Transcription Factor Family AT1G78080 52.189 5.52e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca05g01045 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01045 K09286 - gmx:100802961 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01045 05 27146766 27147710 Cca05g01045 05 27146766 27147710 ECH
Cca05g01045 05 27146766 27147710 Cca03g01219 03 28971631 28973813 PCT