Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01033 ATGAGAGAACAAGGGGTCCTTCATCTTGAGGATGCTGCTGGTCAGACAGAGAGGTCCCAGTGGGTGCTTGATTCTCCCAACCCACCCCCTCTTTGGAAGAAGCTATTTGGTTATGTCAAGGAAACCATTTTGCCTCATGGCAACAACTTCTGCTTCTCATCCAAGAAGAAAACTTCTCATGGACATGCAGCGTCATGCTTCAAGAGCTTGTTCCCAATCTTTAGTTGGATAAAAGATTATAAAGCCTCCAAGTTCAAAGATGACCTCTTAGCTGGATTAACTCTTGCCAGCCTCAGCATACCTCAGAGCATAGGATATGCTAATTTAGCAAAAGTTGGTCCTGAATATGGCCTGTATACCAGTGTTATTCCTCCTCTTATTTATGCAATGATGGGGAGCTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTGTCAATGCTATTATCCTCTCTGGTCCCAAAAGTGGAAGATCCTGTTGCCAATCCTCATGCCTATAGAAATCTTGTCTTTACTGTGACATTCTTCACTGGAATTTTTCAAACTGCATTTGGCGTTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCCTTAGTTGGATTCATGGCAGGTGCTGCTATCATTATTGGTCTTCAGCAGCTCAAAGGGTTACTGGGAATTAGTCACTTTACCTCCAAAACAGATGCAGTATCAGTGTTGGCATCTGTTTATAAGTCACTACATAATCAAATTGCTTCCGGAGAAAAATGGAACCCTCTGAATTTTGTCCTGGGGTGTTCATTCTTGATTTTCATTTTAATTACCCGTTTTATTGGAAGAAGAAACAGAAAGCTTTTCTGGTTGCCTGCTATTTCTCCTCTTCTGTCAGTTATACTATCAACTTTGATTGTGTATTTGTCAAGAGCTGATAAGCATGGGGTTAACATAATAAAGCATGTCAAAGGAGGCCTAAATCCAAGTTCACTTCACCAGTTGCAATTCCATGGTCCACATGTTGGACAAGCAGCAAAAATTGGGTTGATTTGTGCAGTTATCGCGCTCACTGAAGCAATAGCGGTTGGTCGATCTTTTGCTTCCATTAAGGGATATCATCTCGATGGGAACAAAGAAATGTTATCAATGGGATTCATGAACATTGCAGGCTCTTTAACCTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTGAATTTCAGTGCAGGGTGTCAAACAGCAGTGTCAAATATTGTGATGGCTGTTACAGTGTTTTTGTCTTTGGAATTGTTTACAAGGCTCTTATACTACACCCCTGTCCCTATCCTTGCCTCTATCATCCTCTCTGCTCTTCCTGGATTAATTGACTTAAGTGAGGCTCGTTATATCTGGAAGGTTGACAAATTGGACTTTCTTGCTTGTATTGGTGCTTTTCTTGGAGTCTTGTTTGCAACAGTAGAGATTGGTCTTCTTGTTGCAGTGATAATCTCGTTTGCAAAGATACTAATACAATCAATTCGACCTGGAATAGAAGTTCTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTGACTCAATATCCCATGGCCATAAGCACTCCAGGCATCATAGTGATTCGCATAAGTTCTGGCTCACTCTGCTTTGCAAATGCTAATTTTGTCAGAGAAAGAATACTCAAGTGGGTCAGCCAAGATGAAGATGAGCTTAAAGAAACCACCAAGGGTCGAGTCCAAGCTGTAATTCTTGACATGACAAACCTGATGAATGTTGATACTTCCGGAATTCTAGCTCTTGAGGAACTGCACAAGAGGTTGCTTTCACGTGGTGTAGAATTAGCGATGGTGAACCCGAGGTGGTTAGTAATTCACAAGCTTAAGCTGGCACACTTTGTAGAAAAAATTGGAAAAGAGTGGGTTTTCCTTACTGTTGGAGAAGCCGTAGACGCATGTCTCTCTTCCAAAATTGCTAAAGCTTGA 1968 0.4172 MREQGVLHLEDAAGQTERSQWVLDSPNPPPLWKKLFGYVKETILPHGNNFCFSSKKKTSHGHAASCFKSLFPIFSWIKDYKASKFKDDLLAGLTLASLSIPQSIGYANLAKVGPEYGLYTSVIPPLIYAMMGSSREIAIGPVAVVSMLLSSLVPKVEDPVANPHAYRNLVFTVTFFTGIFQTAFGVFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGISHFTSKTDAVSVLASVYKSLHNQIASGEKWNPLNFVLGCSFLIFILITRFIGRRNRKLFWLPAISPLLSVILSTLIVYLSRADKHGVNIIKHVKGGLNPSSLHQLQFHGPHVGQAAKIGLICAVIALTEAIAVGRSFASIKGYHLDGNKEMLSMGFMNIAGSLTSCYVATGSFSRTAVNFSAGCQTAVSNIVMAVTVFLSLELFTRLLYYTPVPILASIILSALPGLIDLSEARYIWKVDKLDFLACIGAFLGVLFATVEIGLLVAVIISFAKILIQSIRPGIEVLGRVPRTEAFCDVTQYPMAISTPGIIVIRISSGSLCFANANFVRERILKWVSQDEDELKETTKGRVQAVILDMTNLMNVDTSGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVEKIGKEWVFLTVGEAVDACLSSKIAKA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01033 655 CDD STAS_SulP_like_sulfate_transporter 524 640 - -
Cca05g01033 655 ProSitePatterns SLC26A transporters signature. 114 135 IPR018045 GO:0008271|GO:0008272
Cca05g01033 655 Pfam Sulfate permease family 85 471 IPR011547 GO:0016021
Cca05g01033 655 SUPERFAMILY SpoIIaa-like 530 647 IPR036513 -
Cca05g01033 655 PANTHER SULFATE TRANSPORTER 11 653 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca05g01033 655 Gene3D STAS domain 503 650 IPR036513 -
Cca05g01033 655 Pfam STAS domain 524 643 IPR002645 -
Cca05g01033 655 ProSiteProfiles STAS domain profile. 540 647 IPR002645 -
Cca05g01033 655 PANTHER SLC26A/SULP TRANSPORTER-RELATED 11 653 - -
Cca05g01033 655 TIGRFAM sulP: sulfate permease 72 643 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01033 Cca-Chr5 26922285 26927975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01033 15 652 Inorganic Solute Cotransporters AT5G10180 63.438 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01033 K17469 - gmx:100776591 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01033 05 26922285 26927975 Cca05g01033 05 26922285 26927975 ECH
Cca05g01033 05 26922285 26927975 Cca03g01207 03 28755333 28759981 PCT