Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01030 ATGGGTCGTGTTAAACTTGAGATAAAGAGAATAGAGAACCCCGCGAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGTCTCATCAAGAAAGCCTATGAACTATCGATCCTATGCGACATTGATATTGCCGTTATAATGTTTTCTCCATCAGGACGTGTTCATCACTTTTCCGGTAGAAAGAGGATTGAGGATGTTTTTACTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTTATTTGCTTAGGACCCTTCAGCAACTAAGGAGTGAAAATGACATAGCACTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGTTACAACAACAACTTCAAATGGCCGAGGAGCAGATAAGGTTATATGAACCCGATCCATTAAAGATGACATCTATGGGAGATCTTGAAAACAGCGAAAAGCAACTAGTAGATGTCTTGACACATGTCATACAGAGAAAGGAATATTTGTTGAGCAATCATCTATCTACATATGATCCATCTGTTATTCAGGGAATACCAACCTCTTTCGAGAATGTAGGTTGGTTGCAAGATGGGAGTCAGAACCATGCCCAAATATTTGATGCATCTGCTCCTTTGGATCCTCTCAGGGACTTGTCTTCCACCGTGTATGGTTCATTCTCCCAAGGAACAAGTTCAAATGTTGATCCACGAGGCATGGGAGAGTGCCACGTGTCAAATGGAAGCGATGGGAACCTTCAAGCATGGCCTCAAGGGTACACCTTGTATCCTCACATGCAGCATGACATGGTGGGCCCTGACATGCCAGAAATGATGCCACATGGGCAAGTGAACATCCCAATCACTGCCTCACACGTGGAACCACCCAAGAATGAACCCGTAGAGTATGACCAATCTAAGCAATCTCATCATCAACATCAACATCAGCTTAATGCTCAATGA 957 0.4284 MGRVKLEIKRIENPANRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVHHFSGRKRIEDVFTRYINLPDQERDNAYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMTSMGDLENSEKQLVDVLTHVIQRKEYLLSNHLSTYDPSVIQGIPTSFENVGWLQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNVDPRGMGECHVSNGSDGNLQAWPQGYTLYPHMQHDMVGPDMPEMMPHGQVNIPITASHVEPPKNEPVEYDQSKQSHHQHQHQLNAQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01030 318 MobiDBLite consensus disorder prediction 288 318 - -
Cca05g01030 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Cca05g01030 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 MobiDBLite consensus disorder prediction 295 309 - -
Cca05g01030 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 268 - -
Cca05g01030 318 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cca05g01030 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca05g01030 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 268 - -
Cca05g01030 318 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cca05g01030 318 Coils Coil 103 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01030 Cca-Chr5 26824145 26829236 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01030 1 288 Type I MADS-box Gene Family AT1G22130 57.006 2.36e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca05g01030 SRF-TF 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01030 - - pvu:PHAVU_008G170400g 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01030 05 26824145 26829236 Cca05g01030 05 26824145 26829236 ECH