Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01017 ATGAACTCTTCATCAACTCAACTAGTCCTGGTGAAAAGGATGGGTATATATGATCCATTCCATCAAGTGAACATGTGGGGGGACAGCTTTAAAATTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGTTAATGATGAAGCCTAGCATGCAGAACAGGACTGATTGTACTCCTAATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGTCTAATGACAAAGCTGATAGGAAGGCTCAAAGACGTCTAGCACAAAATCGCGAGGCTGCTCGGAAATGCCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCATGCAATTGGAGCTGGAGATTGAGAAAGCAAGAAAGCAGGGTTTATACATACGCAGTGCAGTAGATGTCAGTTACATGGGATCATCTGGAACAATAAACCCAGGGATAACTTTGTTTGAACTTGAATATGGACATTGGATTGAAGAGCAAGACAGACGGAATGAAGAACTGAGAAATGCATTACAAACTCATGCATCTGAAATGCAGCTTCATCTTCTTGTTGCGAGTTGCTTGAGCCACTACTCAAATCTTTTCAGGATGAAAGCAGACGCTGCAAAGGCTGATGTCTTTTATTTAATCTCTGGTGCTTGGAAAGCCTCAGTGGAACGCCTTTTTCTTTGGATAGGAGGATCCCGTCCATCACAGCTTCTAAATATCATCGTACCTCAGCTTGAGCCTTTGACTGATCAACAAATTGTGAGCATTAACAACCTCCGGCTTTCATCTCAGCAAGCTGAAGATGCTCTTTCACTAGGATTGGACAAACTCCAGCAGAGTTTAGTCTTCAACATTCCATCAGATCCCTTGGTTGTAGGACACTATGGGTTTGAGATGGCTGCTGCCATGGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGACAACAAACTCTGCTGCACATGTCTCGGATCCTGACAAATGGCCAAGCTGCTCAAGGCTTGCTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCTTTATGGTCTGCTCGTTCATGTGATCCTTCCTTTCCCATTCATCATTCAAACTGA 1110 0.4387 MNSSSTQLVLVKRMGIYDPFHQVNMWGDSFKIDGSLNSIASPMLMMKPSMQNRTDCTPNESREPSGDDQESNDKADRKAQRRLAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKARKQGLYIRSAVDVSYMGSSGTINPGITLFELEYGHWIEEQDRRNEELRNALQTHASEMQLHLLVASCLSHYSNLFRMKADAAKADVFYLISGAWKASVERLFLWIGGSRPSQLLNIIVPQLEPLTDQQIVSINNLRLSSQQAEDALSLGLDKLQQSLVFNIPSDPLVVGHYGFEMAAAMDKGEALEGFVNQADHLRQQTLLHMSRILTNGQAAQGLLAMGEYFHRLRTLSSLWSARSCDPSFPIHHSN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01017 369 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Cca05g01017 369 Coils Coil 97 124 - -
Cca05g01017 369 Coils Coil 158 178 - -
Cca05g01017 369 MobiDBLite consensus disorder prediction 60 89 - -
Cca05g01017 369 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 361 - -
Cca05g01017 369 SUPERFAMILY Leucine zipper domain 78 118 IPR046347 GO:0003700|GO:0006355
Cca05g01017 369 Gene3D - 77 129 - -
Cca05g01017 369 MobiDBLite consensus disorder prediction 49 89 - -
Cca05g01017 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 111 IPR004827 GO:0003700|GO:0006355
Cca05g01017 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Cca05g01017 369 PANTHER TRANSCRIPTION FACTOR TGA9 14 361 - -
Cca05g01017 369 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
Cca05g01017 369 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Cca05g01017 369 Pfam Seed dormancy control 166 239 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01017 Cca-Chr5 26563349 26567525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01017 2 362 Calmodulin-binding Proteins AT1G77920 56.000 1.74e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca05g01017 DOG1 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01017 K14431 - gmx:100775882 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01017 05 26563349 26567525 Cca05g01017 05 26563349 26567525 ECH
Cca05g01017 05 26563349 26567525 Cca03g01195 03 28498503 28503196 PCT