Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01014 ATGCCTCTGCCGCAGCCCCGCCGCGTGGACCCGAAAATCTGGCGCGCATGTGCCGGCGCCGCCGTGAGAATCCCCAAGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGCCACATGGAGCACGCGTCTCCCTCACATTCTCCCTCCCTCGAACCACTCCTGCGATCCCTCCCCTTCGTTCCCTGCCACGTGTCCTCCATCGATTTGCTCGCCGATCCCTACTCCGACGAGGTCTTCGCCAAACTCACTCTCACTCCCTTCCCTTTCCACCACAACAACGCAAACGACCACCAAAACGACCACCAGAGCGACGTCGTTTCATTCTCCAAAATCCTCACTCCCTCCGACGCCAACAACGGCGGCGGATTCTCCGTTCCGCGATACTGTGCCGACTCCATCTTCCCTCCCCTCGATTTCCGCGCCGACCCTCCCTACCAGTACCTCTCCATCACCGACGTCCACGGCGTCGCGTGGCGGTTCCGCCACATCTACCGCGGGACGCCGCGCCGGCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCCGGCGACTCCGTCGTGTTCATGCGGGACTCCGAGGGAAGGGTCTCCGTCGGGATCCGCCGCGCGGCGCGGTTTGCGATGAAGAGCGAGGCCGTCGAGGTGGAGGCGGCGGAAGGGGCGGGGTTTTCGCGGAGCACGACGGGGAGAGTGTCGCCCAAggcggtggctgcggcggcggaggcggcggcgcggAACGAGCCGTTTGAGGTGGTGTATTATCCGAGGGCGGGTTTTGCTGATTTTGTGGTGAGTGCTGAGGTTGTGGATGAAGCGATGAAGTACGCGTGGGTTGGTGGAACGAGAGTGAAGATAGGAATAGAGACCGAGGATTCTTCCAGAATGACGTGGTTTCAGGGGATGGTTGCTTCTGCATGTGCCACTGATAATGGACCTTGGCGCATGCTTCAGGTTATCTGGGATGAACCTGAAGTCTTGCAAAATGCAAAGCGGGTCAGTCCTTGGCAGGTTGAACTTGCTTCCCCCACACTTGCACTTCATACAGTATTTCCCCCTACAAAAAGGTTTAGAGCTGACCAGGGTTCTGGGCTGCTGGGTGAAAGAGAGGGAGACCCCTTTCCTATGTCAGGGTTGTTCCCTAACTCAACAATGGGACACCTGAATAAAAAAATGTTTTGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCAACGAATTTTTCCAACTTTTTAAATGATAACTCTTATCTGTATTTGGGTAGTAGTTCCTTGGTGAACAATACGGTGCAAAGGTTGGAAACTGTGTCAACAGAGCTAAACATTGGCAGTTCTCAATCAGATGACCTTTCACCACATAGCCAGAGTAGTTTACATTCCTCTTGCACAGAGTTTACTGGGACCCACAACAGCAACACTAAAGTTGGTTCTGGTTCAATTCTGCTATTTGGTAAGATCATACATCCTGTTGAATATGATTTGCATGATGCTGATTGCGTGGAAGAAGGTGATCGCAGCAAAGAAACTGAAGGCAGTGACAACCTTCTAGAATAA 1590 0.5264 MPLPQPRRVDPKIWRACAGAAVRIPKLHSRVYYFPQGHMEHASPSHSPSLEPLLRSLPFVPCHVSSIDLLADPYSDEVFAKLTLTPFPFHHNNANDHQNDHQSDVVSFSKILTPSDANNGGGFSVPRYCADSIFPPLDFRADPPYQYLSITDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDSVVFMRDSEGRVSVGIRRAARFAMKSEAVEVEAAEGAGFSRSTTGRVSPKAVAAAAEAAARNEPFEVVYYPRAGFADFVVSAEVVDEAMKYAWVGGTRVKIGIETEDSSRMTWFQGMVASACATDNGPWRMLQVIWDEPEVLQNAKRVSPWQVELASPTLALHTVFPPTKRFRADQGSGLLGEREGDPFPMSGLFPNSTMGHLNKKMFCYDTFPAGMQGARHDLFSATNFSNFLNDNSYLYLGSSSLVNNTVQRLETVSTELNIGSSQSDDLSPHSQSSLHSSCTEFTGTHNSNTKVGSGSILLFGKIIHPVEYDLHDADCVEEGDRSKETEGSDNLLE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01014 529 PANTHER AUXIN RESPONSE FACTOR 5 520 - -
Cca05g01014 529 CDD B3_DNA 107 208 IPR003340 GO:0003677
Cca05g01014 529 SUPERFAMILY DNA-binding pseudobarrel domain 100 224 IPR015300 -
Cca05g01014 529 ProSiteProfiles B3 DNA-binding domain profile. 108 210 IPR003340 GO:0003677
Cca05g01014 529 Gene3D - 105 210 IPR015300 -
Cca05g01014 529 Gene3D - 284 350 - -
Cca05g01014 529 Pfam Auxin response factor 245 320 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca05g01014 529 SMART B3_2 108 210 IPR003340 GO:0003677
Cca05g01014 529 Pfam B3 DNA binding domain 108 209 IPR003340 GO:0003677
Cca05g01014 529 MobiDBLite consensus disorder prediction 455 477 - -
Cca05g01014 529 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 520 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01014 Cca-Chr5 26488745 26493065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01014 7 526 B3 DNA Binding Superfamily AT1G77850 48.221 9.16e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca05g01014 B3 8.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01014 - - ccaj:109814808 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01014 05 26488745 26493065 Cca05g01014 05 26488745 26493065 ECH
Cca05g01014 05 26488745 26493065 Cca03g01186 03 28366059 28369784 PCT