Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01008 ATGGCGGCTTCCGTCGACAACCGTCAATTCGGTGGCCACATGAACGGCGACGTGCCCCTGCCGCCGTTGGACTTCGATTTGGACTCCTCCAGcgacgacgacgacgacgaaaacgacgacgCATCGTATCTGAAAGATTTAATCCAGAAGGCGAACGCGGAAACGGAAGCGTCCGTAATGGACCCGCGCGACGAGGGAACCGCGGACCAGTGGATCGCACGGAACGCTTCCATGGTCCGCCTCACAGGGAAGCACCCCTTCAACTCGGAGCCCCCACTCACGCGCCTCATGCACCACGGCTTCATCACCCCGGTCCCGCTCCACTACGTGCGCAACCACGGCCCGGTCCCCAAGGCGCGCTGGGAGGACTGGACCGTTGAAATAACGGGTCTGGTCAAACGCCCAACCCGGTTCACCGTGGACCGCCTCGTGCACGACTTCCCCAGCCGCGAGTTCCCCGCCACGCTGGTCTGCGCGGGGAACCGCCGCAAGGAGCAGAACATGGTGAAGCAGAGCGTGGGCTTCAACTGGGGCTCCGGCGGCGTCTCCACCTCCGTCTGGCGCGGGGTTCCGCTGCGGCACGTGCTGAGGCGCTGCGGGATCTACGCGCGTGCGAAGGGCGCTCTGCACGTGTGCTTCGAGGGCGCCGAGGATCTTCCCGGTGGCGGTGGGTCCAAGTATGGAACTAGCGTGACGAGGGAGGTGGCCATGGATCCCTCGCGTGACATCATACTCGCGTACATGCAGAACGGGGAGCCTCTGGCGCCGGATCATGGCTTCCCCATTCGCATGATTATTCCTGGCTTCATCGGTGGGAGAATGGTGAAGTGGCTCAAGCGCATTGTGGTCACTCAGGTTGAGAGCGAGAATCATTACCATTATAAGGACAATAGAGTACTACCTTCCCACGTTGATGCTGAACTCGCCACTGATGAAGGTTGGTGGTACAAGCCAGAGTATATTATCAACGAGTTGAATATAAACTCAGTGATAACAACGCCGTGTCACGAGGAGATATTGCCCATCAACCAATGGACTACTCAGAGGCCTTATGTACTCAGAGGCTACGCATATTCTGGTGGTGGGAGGAAAGTGACACGTGTTGAGGTGACATTGGACGGTGGAGAAACGTGGCACGTGTGCGCATTGGACCGTCCTGAGAAACCCAACAAATATGGCAAGTATTGGTGCTGGTGCTTCTGGTCCTTGGAGGTGGAGGTGCTGGACTTACTTGGGACCAAGGAGATTGCGGTTCGTGCTTGGGATGAGGGTCTCAACACCCAGCCTGAAAACCTCATTTGGAATGTTATGGGCATGATGAACAACTGCTGGTTCAGAGTGAAAACAAACGTGTGCAAGCCCCACAAGGGGGAGATTGGTTTAGTGTTCGAACACCCAACCCAACCAGGGAACCAACCCGGAGGGTGGATGGCGAAGGAAAGACATTTGGAGAAATCACAAGAGCCTAAACCAACCCTCAAAAAGAGTGTCTCCACGCCATTCATGAACACCGCCTCTAAAATGTTCTCCATCTCCGAAGTCAAAAAGCACTCTAACCCCGACTCCGCTTGGATCATCGTCCACGGCCACGTCTACGACTGCAGCCGTTTCCTCAAAGACCACCCCGGCGGCACCGACAGCATCCTCATCAACGCCGGCAGCGACTGCACCGAAGAGTTCGACGCCATCCATTCCGACAAAGCCAAGAAAATGCTCGAAGATTACCGAATCGGTGAACTCATCACCACAGGCTACACGTCAGACTCGTCGCCTAATAGTTCCGTGCATGGAAATTCTGAATTTACCTTTTTGGCCCCTATCAAGGAAGCACCCCAACGCAGCGTGGCTCTGAACCCGCGCGAGAAAATCCCATGCAAACTCGTGTCCAAAACGGTGATTTCCGACGACGTGAGGCTCTTCCGTTTGGCGCTGCCCTCGGAGGAGCAAGTATTAGGCCTACCCGTGGGGAAGCACATTTTCGTGTGCGCCAGCATGGATGGCAAGCTATGCATGCGAGCGTACACTCCGACGAGCGGCGTGGAGGAGGTGGGCTTCTTGGAGCTCCTCATCAAGGTGTATTTCAAAGGGGTGCACCCTAAGTTCCCCAACGGAGGCCTCATGTCGCAGCATCTGGACTCTCTCCCATTGGGGTCCACGGTGGACGTGAAGGGCCCATTGGGCCACATAGAGTACACGGGGAGAGGCAACTTCCTGGTCCACGGGAAGGCACGGTTCGCGAAGAAACTGGCCATGCTGGCTGGTGGGACCGGGATCACACCCGTCTACCAAGTGGCCCAAGCGATTCTGAAGGACCCCGAGGACCGCACCCAGATGCACGTGGTGTACGCCAACCGCACCGAGGATGATATTTTGCTGAGGGAGGAGTTGGATGCGTGGGCCAGGGAGCATTGCGATAGCTTCAAGCTCTGGTACGTGGTGGAATCCCCGAGGGAAGGCTGGGCCTACAGTGTGGGCCTCATCACCGAGACCATCATGAGGGAGCATCTTCCCCAACCGTCTGGGGAGGAGGAGACCCTGGCTTTGACTTGTGGGCCACCCCCCATGATTCAGTTCGCGGTGCAGCCCAATTTGGAGAAGATGGGCTACGATGTCAATAACGATTTGCTCGTCTTCTAG 2637 0.5658 MAASVDNRQFGGHMNGDVPLPPLDFDLDSSSDDDDDENDDASYLKDLIQKANAETEASVMDPRDEGTADQWIARNASMVRLTGKHPFNSEPPLTRLMHHGFITPVPLHYVRNHGPVPKARWEDWTVEITGLVKRPTRFTVDRLVHDFPSREFPATLVCAGNRRKEQNMVKQSVGFNWGSGGVSTSVWRGVPLRHVLRRCGIYARAKGALHVCFEGAEDLPGGGGSKYGTSVTREVAMDPSRDIILAYMQNGEPLAPDHGFPIRMIIPGFIGGRMVKWLKRIVVTQVESENHYHYKDNRVLPSHVDAELATDEGWWYKPEYIINELNINSVITTPCHEEILPINQWTTQRPYVLRGYAYSGGGRKVTRVEVTLDGGETWHVCALDRPEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENLIWNVMGMMNNCWFRVKTNVCKPHKGEIGLVFEHPTQPGNQPGGWMAKERHLEKSQEPKPTLKKSVSTPFMNTASKMFSISEVKKHSNPDSAWIIVHGHVYDCSRFLKDHPGGTDSILINAGSDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSDSSPNSSVHGNSEFTFLAPIKEAPQRSVALNPREKIPCKLVSKTVISDDVRLFRLALPSEEQVLGLPVGKHIFVCASMDGKLCMRAYTPTSGVEEVGFLELLIKVYFKGVHPKFPNGGLMSQHLDSLPLGSTVDVKGPLGHIEYTGRGNFLVHGKARFAKKLAMLAGGTGITPVYQVAQAILKDPEDRTQMHVVYANRTEDDILLREELDAWAREHCDSFKLWYVVESPREGWAYSVGLITETIMREHLPQPSGEEETLALTCGPPPMIQFAVQPNLEKMGYDVNNDLLVF 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01008 878 Gene3D - 83 323 IPR036374 -
Cca05g01008 878 SUPERFAMILY E set domains 324 451 IPR014756 -
Cca05g01008 878 PIRSF Nitr_rd_NADH 10 877 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cca05g01008 878 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 537 544 IPR018506 GO:0020037
Cca05g01008 878 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 506 581 IPR001199 -
Cca05g01008 878 Pfam Oxidoreductase FAD-binding domain 625 731 IPR008333 -
Cca05g01008 878 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 130 165 IPR022407 GO:0043546
Cca05g01008 878 Gene3D - 727 873 IPR039261 -
Cca05g01008 878 MobiDBLite consensus disorder prediction 1 41 - -
Cca05g01008 878 CDD cyt_b5_reduct_like 625 873 - -
Cca05g01008 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 750 769 IPR001709 GO:0016491
Cca05g01008 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 776 785 IPR001709 GO:0016491
Cca05g01008 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 672 679 IPR001709 GO:0016491
Cca05g01008 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 788 799 IPR001709 GO:0016491
Cca05g01008 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 540 550 IPR001709 GO:0016491
Cca05g01008 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 846 854 IPR001709 GO:0016491
Cca05g01008 878 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 61 322 IPR036374 -
Cca05g01008 878 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 719 873 IPR039261 -
Cca05g01008 878 Pfam Mo-co oxidoreductase dimerisation domain 320 451 IPR005066 GO:0016491|GO:0030151
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 79 93 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 238 254 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 154 165 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 180 195 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 255 268 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 322 334 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 394 404 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 367 379 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 165 177 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 432 445 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 101 117 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 353 367 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 419 431 IPR008335 GO:0016491
Cca05g01008 878 PRINTS Eukaryotic molybdopterin domain signature 271 284 IPR008335 GO:0016491
Cca05g01008 878 PANTHER NADH-CYTOCHROME B5 REDUCTASE 42 878 IPR001834 GO:0016491
Cca05g01008 878 SMART Cyt_b5_2 509 581 IPR001199 -
Cca05g01008 878 SUPERFAMILY Riboflavin synthase domain-like 614 732 IPR017938 -
Cca05g01008 878 Gene3D - 502 583 IPR036400 -
Cca05g01008 878 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 505 584 IPR036400 -
Cca05g01008 878 Pfam Cytochrome b5-like Heme/Steroid binding domain 512 580 IPR001199 -
Cca05g01008 878 PRINTS Cytochrome B5 signature 541 555 IPR001199 -
Cca05g01008 878 PRINTS Cytochrome B5 signature 556 563 IPR001199 -
Cca05g01008 878 PRINTS Cytochrome B5 signature 568 580 IPR001199 -
Cca05g01008 878 PRINTS Cytochrome B5 signature 531 541 IPR001199 -
Cca05g01008 878 MobiDBLite consensus disorder prediction 27 41 - -
Cca05g01008 878 Pfam Oxidoreductase molybdopterin binding domain 113 292 IPR000572 -
Cca05g01008 878 Gene3D - 324 499 - -
Cca05g01008 878 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 620 732 IPR017927 GO:0016491
Cca05g01008 878 Pfam Oxidoreductase NAD-binding domain 751 860 IPR001433 GO:0016491
Cca05g01008 878 PRINTS Cytochrome B5 reductase signature 651 662 - -
Cca05g01008 878 PRINTS Cytochrome B5 reductase signature 788 799 - -
Cca05g01008 878 PRINTS Cytochrome B5 reductase signature 750 769 - -
Cca05g01008 878 PRINTS Cytochrome B5 reductase signature 846 854 - -
Cca05g01008 878 PRINTS Cytochrome B5 reductase signature 717 731 - -
Cca05g01008 878 PRINTS Cytochrome B5 reductase signature 672 679 - -
Cca05g01008 878 CDD eukary_NR_Moco 64 449 - -
Cca05g01008 878 PANTHER NITRATE REDUCTASE 42 878 - -
Cca05g01008 878 Gene3D Translation factors 612 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01008 Cca-Chr5 26329257 26334217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01008 607 869 NADPH P450 reductases AT5G17770 39.623 2.96e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01008 K10534 - gmx:100813471 1586.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01008 05 26329257 26334217 Cca05g01008 05 26329257 26334217 ECH