Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01007 ATGTCTCAAGTGGGTTCTCTCTCCTCCGAAATGGAGACACTGAACCACGTTCTCTCGCTAGTGGAGGCGTTCCGAGCGTTCGACGTGGACAACGACGGTCGTATAACGCATGCAGAGCTCGGCGGAATCTTGGGGTCGCTAGGGTACAACGCTAGCGAGCAAGAAGTGAGGGCGATGATGGAACGAGGTGACAAGAACAAAGATGGGTTGTTAAGCATACACGAGTTCTTGGAGATGAACACCAAGGATTTGGAGGGTGGAGATCTCGCGAACACCCTCAGCGCGGCGTTTGAGGCGTTGGATGAAGACGGGAACGAGATTCTGACGGGGAAAGAGCTTCACGAGGTGATGCAGAACTTGGGGCTTGAGTTGTCTCTGCAGAATTGTGAGCATCTTGTTGCTTCTCTTGATGCGGATGGAGATGGCGCTGCAATCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGGTTGTGAAAGGGAAACAAACAGGTTATGGGCTTCCAGCTGATATATGGAGTCTGGGATGCACTGTGTTGGAGATGTTAACCGGCCAAATTCCATACTATCACTTAGAATGTATGCAGGCATTGTTTAGAATTGGAAGAGGTGAGCCACCTCCTGTGCCTGATTCTCTTTCAAAAGATGCAAGGGATTTTATCCTGCAGTGTCTGAAAGGGTTAAACTCGTCACCTCCAACTATGAAACATAATGAAGATCTGTCTATCATTGGATATAAAATATTTCCAATGTTCAGTCTTCAAGTTGCTAGAGTTGGTCCGAGGCGCATTGTTGTTGTAACAATAGTTGGTTGTATTGTGCCTTCAGAATTCAGAGGTTGCTTGCTTGTAACTATACTCAATTTTTTAAGCACTGCTTTGGATATAGCAATTGATATGGCACTCCAGAGAGTTAACTTATCGCTTGGCTTGAATATCATATTTGAGAATTATGGTCCACGTATTATTTAA 990 0.4556 MSQVGSLSSEMETLNHVLSLVEAFRAFDVDNDGRITHAELGGILGSLGYNASEQEVRAMMERGDKNKDGLLSIHEFLEMNTKDLEGGDLANTLSAAFEALDEDGNEILTGKELHEVMQNLGLELSLQNCEHLVASLDADGDGAAIKLNDVKSCKGTAFWMAPEVVKGKQTGYGLPADIWSLGCTVLEMLTGQIPYYHLECMQALFRIGRGEPPPVPDSLSKDARDFILQCLKGLNSSPPTMKHNEDLSIIGYKIFPMFSLQVARVGPRRIVVVTIVGCIVPSEFRGCLLVTILNFLSTALDIAIDMALQRVNLSLGLNIIFENYGPRII 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01007 329 Gene3D Transferase(Phosphotransferase) domain 1 143 246 - -
Cca05g01007 329 SMART serkin_6 38 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01007 329 Pfam Protein kinase domain 149 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01007 329 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 144 235 - -
Cca05g01007 329 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Cca05g01007 329 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 144 235 - -
Cca05g01007 329 SUPERFAMILY Protein kinase-like (PK-like) 150 238 IPR011009 -
Cca05g01007 329 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Cca05g01007 329 Pfam EF-hand domain pair 21 79 IPR002048 GO:0005509
Cca05g01007 329 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Cca05g01007 329 SUPERFAMILY EF-hand 14 143 IPR011992 -
Cca05g01007 329 Pfam EF-hand domain pair 108 143 IPR002048 GO:0005509
Cca05g01007 329 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01007 329 SMART efh_1 55 83 IPR002048 GO:0005509
Cca05g01007 329 SMART efh_1 92 120 IPR002048 GO:0005509
Cca05g01007 329 SMART efh_1 19 47 IPR002048 GO:0005509
Cca05g01007 329 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Cca05g01007 329 CDD EFh 20 79 IPR002048 GO:0005509
Cca05g01007 329 Gene3D - 87 142 - -
Cca05g01007 329 Gene3D - 2 85 - -
Cca05g01007 329 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01007 Cca-Chr5 26313051 26320520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01007 146 232 MAP Kinase Kinase Kinase AT4G08500 75.000 1.95e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca05g01007 Pkinase 8.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01007 - K02183 gmx:100782291 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01007 05 26313051 26320520 Cca05g01007 05 26313051 26320520 ECH