Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01005 ATGGTCAAACAATATGTTGAAAAAGAAGACGGATTCATTTTTGCTGTAAAAGAAGTGTCACTGCTTGATCAAGGGAGAGCAGGAATGGAAAGTTTATATCAACTGCAACATGAAATTGATCTTTTGAGCCAGATGGATCATGAGAATATAGTTCAATACTTCGGCACTGAAACGGACCAATCTAATCTACAGATTTTGCATGGTTTAAATTATCTTCATGATCGAAAGATTGTTCACAGGGATATTAAATGTTCAAATATATTGGTGGATAAACACGGATCTGTTAAGCTTGCAGATTTTGGAATGGCAAAGGTAATCAAATTGAACGATGTTAACTCATGCAAGGGAACAGTACCGTGGATGGCCCCAGAGGTTGTACCGTACGTGGGGGGGGGAAAAACATCTTATGGGCTTCCGGCTGATATATGGAGTCTGGGATGCACTGTGCTGGAGATGTTAACGGCCAAAATTCCATACCATACCTTTGAATGGTGGGAAGCATTGTTTTTAATTAAAGATGGGGAGCCACCTGAGATGAACGTCCCACCGCTGCTCAACTCTTACACCATCCATTTGTCCGAAAGCCACTTTCCCACTCTTCTGCTTTTGCATGTCCTTATATCTGTCCAAAGCAGATTTAGCTTGTCATCTCAAACGTTGCAGAATAAGATCTATCATTCATTTGATATATCAAATGTCTCCAATGTTTCTTTCTTCATGCTGTTAGAGTTGGTCTAA 738 0.4011 MVKQYVEKEDGFIFAVKEVSLLDQGRAGMESLYQLQHEIDLLSQMDHENIVQYFGTETDQSNLQILHGLNYLHDRKIVHRDIKCSNILVDKHGSVKLADFGMAKVIKLNDVNSCKGTVPWMAPEVVPYVGGGKTSYGLPADIWSLGCTVLEMLTAKIPYHTFEWWEALFLIKDGEPPEMNVPPLLNSYTIHLSESHFPTLLLLHVLISVQSRFSLSSQTLQNKIYHSFDISNVSNVSFFMLLELV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01005 245 Gene3D Phosphorylase Kinase; domain 1 3 65 - -
Cca05g01005 245 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 9 65 - -
Cca05g01005 245 Gene3D Transferase(Phosphotransferase) domain 1 66 228 - -
Cca05g01005 245 Pfam Protein kinase domain 63 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01005 245 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 64 179 - -
Cca05g01005 245 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 9 65 - -
Cca05g01005 245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Cca05g01005 245 SUPERFAMILY Protein kinase-like (PK-like) 2 214 IPR011009 -
Cca05g01005 245 SMART serkin_6 2 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01005 245 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 64 179 - -
Cca05g01005 245 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01005 Cca-Chr5 26262190 26280074 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01005 10 179 MAP Kinase Kinase Kinase AT4G08500 53.234 2.54e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca05g01005 Pkinase 6.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01005 K13414 - ccaj:109816844 342.428