Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01002 ATGGATGGGAACCCTAACCTCACTTCCTCTTCCTCTCAGGAATTCCTCAAACAAGTCCAAGCCGCACTCAAACGCCACCGCCCTCTCGGCGCACCGCAACCGCACAGCGTCCGCCCTAAGCGCTCCATGCTGCCTCACCGGACCCTCGCCAGCGGACCACCTTCCATTTCCGACACTTCCTCCGGCGAAGCCTTCCCGCCGCCGGAATCTCAACCCCTAGCAGCTGCGCACAAGAAGGTTCAGTTTTCAACTGCGCGGACACATGATGAGGCATCAATTGAATTCAATCAACACATGAAGAACCAAAACGTGCAGCAGGTAGAGTCAGAAACTAGTTTGATATCCGAGGGAGGCAAGAGTTCTTTGCTTCCAAAGAGAACAATAGTTACTCAGGATCATCTGCATCAATTCAAAAACTTTTTGAGCCAACCAGCTACACATTCCTCCATAGTGGGACCCTCATGTCCTACAACTACATCGGTCCATTCAACTTCAGCACCTATGTTAAATTCTATAACTCATTGTTCTCATTCCTGTATAGATAGTGGCTCACATGTGGCTGCAGAACCTTATGGAAACCTGAGTGTTAATCCTCACCCTATAGCTCCAGGGGCTGTTAAATCACCAAATAATTCTCTGAAAGACACCAATAGAATGTCAATTGATCAGGTGGCAAGTGCAGTTCAAGCTTGTACTTCACTAGTTGATGCAGAGTTGACATTTAAGCAGAGTAACCCATATAAGGATCAGCAAGGATGTATGTTAAAGGAAACTAGTATTTCAAAATATACTTCTTGTTGTGATGACATGTTAAGTAAAGGGGAAGAGTCTGCAGCTGTTACCAACATACAGCCTCAGGCTCCGATTTCATCATCAGATGTGAAGTTGGAATCTTCTAAGTTGGCAAAACAAGATAAAAATGCAAGTAGTAAAGGATCATCAGGCACTCGAAAGAAGACCTATGATCCTGACTTGTTTTTCAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCGTCAGATTGTACAATCTATGCACTTAAAAAGATAAAACTAAAGGGCCGTGATTATGCCACTGCATATGGTTTTTGTCAAGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATAAATGGCTCCTTCAGTAATAAGGATGGTAGAGTCAGGGATGATGGATATATATACATGGTGCTTGAATATGGGGAAATCGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTTGATGGAAGCAACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCACGAAGAACGTATTGTGCATTCTGACCTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCTTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGCGATACAACAAACATCCAACGGGATTCACAGGTTGGCACTCTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCGAGTGGAAACATCATAAAATGTGGTCGGTCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCCTTTTCAGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCAAATCATGAAATTACGTATGAGCCAGTTTCAAATCCGTGGCTTGTGGATCTTATGAAAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGCTTCTCCAGCATCCCTTTCTAGTTCCTCGAGTTCCATGTCCATCTTTGTCCCGAGATCATACCTTGAAATTGCTGCATCTTATTTCTGAGACTTGCACAAATGACCCAGAAGCATTGCAGCTCTGTTGTCAACTTCAACAGGTGCTTGATAATCCTATCAAGTTAATAAATACTCATTCATTAAATTCCATAGACCAACAGCGTAAGTTGCTGACCCGAATATCGGAACTCTGTATTCAGCTACAGGAACGATTGACAAATACTGACAAACAATAG 2136 0.426 MDGNPNLTSSSSQEFLKQVQAALKRHRPLGAPQPHSVRPKRSMLPHRTLASGPPSISDTSSGEAFPPPESQPLAAAHKKVQFSTARTHDEASIEFNQHMKNQNVQQVESETSLISEGGKSSLLPKRTIVTQDHLHQFKNFLSQPATHSSIVGPSCPTTTSVHSTSAPMLNSITHCSHSCIDSGSHVAAEPYGNLSVNPHPIAPGAVKSPNNSLKDTNRMSIDQVASAVQACTSLVDAELTFKQSNPYKDQQGCMLKETSISKYTSCCDDMLSKGEESAAVTNIQPQAPISSSDVKLESSKLAKQDKNASSKGSSGTRKKTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVINGSFSNKDGRVRDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNPWLVDLMKRCLAWDRNERWRIPQLLQHPFLVPRVPCPSLSRDHTLKLLHLISETCTNDPEALQLCCQLQQVLDNPIKLINTHSLNSIDQQRKLLTRISELCIQLQERLTNTDKQ 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01002 711 SMART serkin_6 334 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01002 711 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 9 675 IPR027084 GO:0004712|GO:0007093|GO:0051304
Cca05g01002 711 PANTHER MIXED LINEAGE PROTEIN KINASE 9 675 - -
Cca05g01002 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Cca05g01002 711 SUPERFAMILY Protein kinase-like (PK-like) 328 640 IPR011009 -
Cca05g01002 711 MobiDBLite consensus disorder prediction 52 66 - -
Cca05g01002 711 Gene3D Phosphorylase Kinase; domain 1 327 411 - -
Cca05g01002 711 MobiDBLite consensus disorder prediction 1 18 - -
Cca05g01002 711 CDD PKc_Mps1 332 627 - -
Cca05g01002 711 MobiDBLite consensus disorder prediction 1 76 - -
Cca05g01002 711 ProSiteProfiles Protein kinase domain profile. 334 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01002 711 Pfam Protein kinase domain 334 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01002 711 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Cca05g01002 711 MobiDBLite consensus disorder prediction 290 317 - -
Cca05g01002 711 Gene3D Transferase(Phosphotransferase) domain 1 448 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01002 Cca-Chr5 26153855 26160669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01002 335 636 MAP Kinase Kinase Gene Family AT3G21220 27.597 1.20e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Cca05g01002 Pkinase 4.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01002 K08866 - gmx:100816674 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01002 05 26153855 26160669 Cca05g01002 05 26153855 26160669 ECH