Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00991 ATGGACATGATAATGATAGACGACCCTGATTTTCTGGACTTCTCCGACCACCACAGCGCCACCACCCCTTCCTCCCCTCTCATCGACTGGGACTCGCTGGCCGCCCTCGTCCTCAGCCCAGACCCACCCCCCGCCGAAGACTCCGACTCCACCGTGGCCACCTCggaggaggaggaggaggaggGCCTCCGCCTGGTGCACCTCCTCCTGGCGGCGGCGGAGGCCCTCAGCTCCGGCACCGAGAGCCACTCCCTGGCTCGAGCGATATTGGTTCGGCTCAACGAGTTGGCGTCCCCCAGCCACGGCACCAACATGGAAAGACTCGGCGCGCACTTTAGCCACGCCCTGGAGCATCTGCTAAACGGCGCGGGCACTGCGCACAGCACCCCACTCCCAGTGACCGACACGCTCCTCGCCTTCCAGCTTCTCCAGGACATGTCCCCTTACGTCAACTTCGCCCACTTCACCGCCAACCAGGCCATTTTAGAATCCCTGGCCCACCAAAAACGCCTCCACGTCGTCGACTTCGACGTCTCCCAAGGGGCCCAATGGGCCTCCCTCATCCAAGCCCTCTCCTCATCCCCAGGCCCACACCTCCGCATCACTGCCTTGTCCAGAGGCGGAGAACGCAAATCCCTGGCCACCGTTCAGGAAACCGGACGGAGACTAACGGCGTTCGCGGCCTCCGTTAAACAACCCTTCTCCTTTCACCACTGTCGGTTGGACCCCGACGAAACGTTTCGTCCTTCTTCCTTGAAGCTCGTTCGTGGCGAGGCTTTGGTCTTTAACTGCATTCTCCATTTGCCTCACCTCGCTTTCCGACCCTCAGCCTCGGTTGCTTCGTTTTTGGAAGGTGCTAAGGAGTTGAAGGCCAGCCTGGTCGTTGTGGTCGAGGAAGAGGTGGGCCCCATCGGGGACGGGGGGTTTCTGGGCCTCTTTATGGACTCCCTGCACCGCTACTCGGCTGTGTTTGATTCGCTTGAGGTTGGGTTTCCGATGCAGAGATGGGCCCGGGGTTTGGTGGAGCGCGTGTTGTTGGGCCCGAGGATAGTGGGCTCGGTGGGGCGGATGTTTCGTGGGGGTGAGACTgaggaggaggaggagggaggGTCGTGGGTGGAGTGGTTGGGTGCGGGCGGCTTCAGGGGAGTTCCCATAAGCTTCGCCAATCATTGCCAAGCGAATCTGTTGGTGGGACTATTTAACGACGGATATAGGGTGGAGGAGTTGGGGAATAACAAGTTAGTGTTGGGTTGGAAATCACGCCGCTTGCTCTCAGCTTCTCTTTGGACTTCACATTCTTGA 1305 0.5824 MDMIMIDDPDFLDFSDHHSATTPSSPLIDWDSLAALVLSPDPPPAEDSDSTVATSEEEEEEGLRLVHLLLAAAEALSSGTESHSLARAILVRLNELASPSHGTNMERLGAHFSHALEHLLNGAGTAHSTPLPVTDTLLAFQLLQDMSPYVNFAHFTANQAILESLAHQKRLHVVDFDVSQGAQWASLIQALSSSPGPHLRITALSRGGERKSLATVQETGRRLTAFAASVKQPFSFHHCRLDPDETFRPSSLKLVRGEALVFNCILHLPHLAFRPSASVASFLEGAKELKASLVVVVEEEVGPIGDGGFLGLFMDSLHRYSAVFDSLEVGFPMQRWARGLVERVLLGPRIVGSVGRMFRGGETEEEEEGGSWVEWLGAGGFRGVPISFANHCQANLLVGLFNDGYRVEELGNNKLVLGWKSRRLLSASLWTSHS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00991 434 PANTHER SCARECROW-LIKE PROTEIN 26 47 431 IPR030028 -
Cca05g00991 434 ProSiteProfiles GRAS family profile. 56 431 IPR005202 -
Cca05g00991 434 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 431 IPR005202 -
Cca05g00991 434 Pfam GRAS domain family 65 431 IPR005202 -
Cca05g00991 434 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00991 Cca-Chr5 25962847 25964427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00991 56 434 GRAS Transcription Factor Family AT3G54220 36.641 1.01e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca05g00991 GRAS 2.2e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00991 - - gmx:100816317 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00991 05 25962847 25964427 Cca05g00991 05 25962847 25964427 ECH