Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00985 ATGGTGAAGCCAGAGAACAAGATCCACACAGAGGCATCAAAGCCAATGAGACCATCATCAAGTGACACCAACATCAACACCAAGAAGAAGTACAAGGGTGTGAGAATGAGAAGCTGGGGGTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACAAGAATATGGTTAGGATCTTACTCAACAGCAGAGGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTCAAAGGCTCTTCAGCCAACCTCAACTTCCCTTCAACTTCATCACACTACATCAACATTCCTCAAGACACTGCCATGTCCCCAAAATCAATTCAAAGAGTTGCTGCAGCTGCTGCTAATAGTTTTGTTGACAATGCTAATGCAAATGCTATTCCTATTCCTACCACCCCACCTtcttctcttcctgcttcaacttcttcatcctcgttggtctcatcaccatcaattgcatcttcatcatcatcatcatcTCCCTCAGAACAAATAGATGATGATGTCTCACTTCTCTCACCGTTTTTTGGGGATCAAGCAAATGAATCAATGGCCATGATGGAACCTTGGTATGGCTTGGAGGGGTTGCAATCACCAAAGTATGTTGATCAAATGCTGAATGGGGCATTCTTTGACATTGATTCAACACACTTGCTTGGTGATCTGTATGAAGAAAGTGACATCCGTTTGTGGAGTTTCTGCTGA 705 0.3929 MVKPENKIHTEASKPMRPSSSDTNINTKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSTSSHYINIPQDTAMSPKSIQRVAAAAANSFVDNANANAIPIPTTPPSSLPASTSSSSLVSSPSIASSSSSSSPSEQIDDDVSLLSPFFGDQANESMAMMEPWYGLEGLQSPKYVDQMLNGAFFDIDSTHLLGDLYEESDIRLWSFC 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00985 234 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Cca05g00985 234 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Cca05g00985 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 12 234 - -
Cca05g00985 234 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Cca05g00985 234 MobiDBLite consensus disorder prediction 13 27 - -
Cca05g00985 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 234 - -
Cca05g00985 234 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Cca05g00985 234 MobiDBLite consensus disorder prediction 1 27 - -
Cca05g00985 234 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Cca05g00985 234 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Cca05g00985 234 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Cca05g00985 234 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00985 Cca-Chr5 25890731 25891879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00985 1 233 AP2-EREBP Transcription Factor Family AT1G21910 43.182 1.01e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca05g00985 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00985 - - gmx:100813313 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00985 05 25890731 25891879 Cca05g00985 05 25890731 25891879 ECH