Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00979 ATGGAATGTTGTAAGAAAGTGTTTGATTGGTTCCGCAATGCAAAATCATATTTGATAATATTGAGCTTGCAATTTGGCTCTGCTGGCATGTATCTTATCACCATGGATGCTCTCAATAAGGGCATGAGTCATTATGTGTTTGTCGTTTACAGAAATGTCATCGCCACTGTAGCTCTTGCCCCATTCGCTTTTTTTCTTGAAAGGAAAGTTAGGCCAAAGATGACTGTTCGGATATTTTCAGAGATTATGGCAGTGGCTTTTGTCGAGATAATACTTGATCAATGCTTCACCTTCTTAGGAATGAAGTACACATCAGCATCATTTGCCTCAGCTGTGATGAATTCCGTACCCTCCATTACCTTTGTACTCGCAATCATTTTTCGATTGGAGCGCATGAAGATGAAGGAGATAGGATGTTTAGCGAAAGTGATTGGCACTATGGTTACTCTTGGAGGTGCTTTTCTGATGGCACTGTACAAAGGCCCAATTGTTAACTTTGCAGGCTCATCAGGCAGCCACGCGGGCCAGCCCGAGAATGTGAACGATCCCTCTGGCAATCACTGGCTCATTGGCGCTTGTTTTCTCCTCATTGGCTGTGCTGGCTTCTCTGCTTTCTACATTTTGCAAGCCATAACATTGAGAAAGTACCCAGCAGAGATGTCGCTAGCCACGTGGGTTTGCTTCGTAGGTGCACTCCAAAGCAGCGCAGTTACTATTTTCATGGAGCGTAATACCCCTCATGTCTGGTCTATTTCCCTAGACTCTAGGCTTGTTGCTTATGCATACTCGGGAATAGTGACATCAGCAATCCAATTTTATGTGCAAGGCATGGTTATCAAAACCACAGGCCCAGTTTTTGTGACTGCATTTAATCCTCTTCGTATGATTATAGTCACAGCCTTGGCCTGCATCGTCCTCTCAGAGAAACTCCACCTTGGAAGCATTATTGGAGGCGTGGTAGTGGTTATTGGGCTATATCTAGTTGTGTGGGGAAAAGCTAAAGAACATAAACATGCAATGCCAGCGTCCCCTGAAAAGGTGACCCTTCAACGCCAACAACAGCTACTACCAGTTACTGCACCCACCACCAGAAGTGATGAAAATGATAACAAAGCTCAGTTAGTGACAGTTGAAGAAAATAAAAACGGTGATTTGGTGGGAACCCAGAAACAGTAA 1176 0.4413 MECCKKVFDWFRNAKSYLIILSLQFGSAGMYLITMDALNKGMSHYVFVVYRNVIATVALAPFAFFLERKVRPKMTVRIFSEIMAVAFVEIILDQCFTFLGMKYTSASFASAVMNSVPSITFVLAIIFRLERMKMKEIGCLAKVIGTMVTLGGAFLMALYKGPIVNFAGSSGSHAGQPENVNDPSGNHWLIGACFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGALQSSAVTIFMERNTPHVWSISLDSRLVAYAYSGIVTSAIQFYVQGMVIKTTGPVFVTAFNPLRMIIVTALACIVLSEKLHLGSIIGGVVVVIGLYLVVWGKAKEHKHAMPASPEKVTLQRQQQLLPVTAPTTRSDENDNKAQLVTVEENKNGDLVGTQKQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00979 391 MobiDBLite consensus disorder prediction 358 391 - -
Cca05g00979 391 Pfam EamA-like transporter family 27 156 IPR000620 GO:0016020|GO:0016021
Cca05g00979 391 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020|GO:0016021
Cca05g00979 391 PANTHER WAT1-RELATED PROTEIN 11 363 IPR030184 GO:0016021|GO:0022857
Cca05g00979 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 334 - -
Cca05g00979 391 PANTHER WAT1-RELATED PROTEIN 11 363 - -
Cca05g00979 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00979 Cca-Chr5 25754989 25759670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00979 1 355 Nodulin-like Gene Family AT2G37460 45.915 1.74e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00979 - - gmx:100813852 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00979 05 25754989 25759670 Cca05g00979 05 25754989 25759670 ECH