Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00978 ATGGAGGATCAAAATGCATCATCTAATGGAATGGGGAAGACGTTCCGCAAGATTAAGCCCTACCTTGCTATGGTGTCCCTTCAGTTTGGGTACTCCGGAATGTACATCATCACCATGGTTTCCTTCAAGCATGGCATGAGCCATTGGGTACTCTCCGTGTACCGTCACATAATTGCCACTCTCATCATGGCACCTTTTGCATTTGTCCTCGAAAGAAAAATACGGCCAAAGATGACTTTCCCTGTGTTCCTGAGGCTAGCAGCTCTCGGTTTCCTTGAGCCCGTGCTTGATCAAAACTTGTACAACATGGGAATGAAGAACACCTCAACAACGTTTGCATCGGCCTCCATTAATGTCCTCCCAGCCATTACTTTTATATTGGCACTCATTTGCAGGTTAGAGACAGTGAACTTCAAAAAGGTACACAGTGTAGCCAAGGTAGTTGGAACAGCAGTAACAGTCACAGGAGCCATGGTTATGACTTTGTACAAAGGCCCTGCCCTTCAGATCATAAAGGGACATGCAGCAAGTCACCATGACAGTGGCAGCACCACAGAGCCCTCTGAACAAAACTGGGTGCTTGGCACAGTAATGCTCATTGCAAGTTGCGGTGGTTGGGCTAGCTTCTTCATCTTGCAATCCTTCACTTTGAAGATGTACCCAGCAGAGCTCTCAGTTACAGCTTGGATTTGCTTTTTGGGCATTTTTGAGGGTGGAATTGCTACTCTTATATTTGAACGTGACATGAGTGTGTGGTCCATAGGCATGGACTCAAGGCTACTTGCTTGTGTTTATTCTGGTGTGGTATGCTCTGGAATGGCATACTATGTACAAGGAGTTGTGACCAGGGAACGTGGACCTGTGTTTGTGACTTCTTTCAGTCCTCTTTGTATGATTATCACTGCTGCATTGGGATCCATTGTCTTGGCTGAGCAAGTTTTTACGGGAAGTATAATTGGAGCAGTTATCATTGTGACTGGACTTTACACCGTGGTATGGGGAAAAAGCAAAGACAAACTGAACACAACGGACGTAGCAAAAAGTGAGGGCCAAGAATTGCCAATTAAGGATGATACAAAGTCAGGAACAGACAATTTTGACAGCATTGAGATCAATGTTCCTACTGGGGCAGGAAAGAATGTGCTTCCTTCAGCACGAACATAG 1164 0.4545 MEDQNASSNGMGKTFRKIKPYLAMVSLQFGYSGMYIITMVSFKHGMSHWVLSVYRHIIATLIMAPFAFVLERKIRPKMTFPVFLRLAALGFLEPVLDQNLYNMGMKNTSTTFASASINVLPAITFILALICRLETVNFKKVHSVAKVVGTAVTVTGAMVMTLYKGPALQIIKGHAASHHDSGSTTEPSEQNWVLGTVMLIASCGGWASFFILQSFTLKMYPAELSVTAWICFLGIFEGGIATLIFERDMSVWSIGMDSRLLACVYSGVVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQVFTGSIIGAVIIVTGLYTVVWGKSKDKLNTTDVAKSEGQELPIKDDTKSGTDNFDSIEINVPTGAGKNVLPSART 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00978 387 PANTHER WAT1-RELATED PROTEIN 14 362 IPR030184 GO:0016021|GO:0022857
Cca05g00978 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 164 - -
Cca05g00978 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 337 - -
Cca05g00978 387 PANTHER WAT1-RELATED PROTEIN 14 362 - -
Cca05g00978 387 Pfam EamA-like transporter family 32 150 IPR000620 GO:0016020|GO:0016021
Cca05g00978 387 Pfam EamA-like transporter family 195 332 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00978 Cca-Chr5 25712866 25718304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00978 12 367 Nodulin-like Gene Family AT1G44800 64.624 2.67e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00978 - - gmx:100814921 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00978 05 25712866 25718304 Cca05g00978 05 25712866 25718304 ECH