Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00977 ATGGACGTGCAAGGAGTTAAATTCATCTCTCTAACTATGGTGGTAGGCACTTCAGAGCCAGAGAGAAAGGTACGAGTTCATTCTTTGATGTTACCACTCCCAAGTAATGGTGACCTTTTCTCGTATCCAAATCTTAATTGGTTAGACAGTTTGCTCGCAACGTACGGTGTGCCTCAAACTTTCATCAACGGTCATGATTGTGACATGATTGCAAATCTGTCAAAAATGTTACGTGATAGGGTACTTCAGTATCTAGGAGTTCACAAGTGTTTTTGCATGTATGTTATGGTGTTAAAGGATCGTTGTTGTTATAACATAGTGAATGTTCCGTTCTTCTATCTTGAACATGTTCCATCGAGTGAGACTGTGGAAAAAATGGCTTGTGAGGGTGGTCAACATTCTCTGCCTGCGGGGACAACTATGCTTGAAAGGTTTAAGGTTATGGATCATGAAATGGAGAACTGCATGGTATGTTTGGAAGATTTCAAGTCTGGTGATGATGCAGCAGCGAGATTACCTTGTACCCATGTTTGTCACTATCATTGTATTTTAGGATGGTTTGTGCAGAATGCCACATGTCCTGTTTGTCGATTTTCATGCACTCATGCCTCTTCTTGA 618 0.411 MDVQGVKFISLTMVVGTSEPERKVRVHSLMLPLPSNGDLFSYPNLNWLDSLLATYGVPQTFINGHDCDMIANLSKMLRDRVLQYLGVHKCFCMYVMVLKDRCCYNIVNVPFFYLEHVPSSETVEKMACEGGQHSLPAGTTMLERFKVMDHEMENCMVCLEDFKSGDDAAARLPCTHVCHYHCILGWFVQNATCPVCRFSCTHASS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00977 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 199 - -
Cca05g00977 205 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 134 199 - -
Cca05g00977 205 Pfam Ring finger domain 154 197 IPR001841 -
Cca05g00977 205 SUPERFAMILY RING/U-box 154 201 - -
Cca05g00977 205 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Cca05g00977 205 SMART ring_2 155 196 IPR001841 -
Cca05g00977 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00977 Cca-Chr5 25707100 25707717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00977 138 197 C3H Transcription Factor Family AT4G12190 38.710 2.37e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00977 - K11982 aprc:113862471 166.777