Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00973 aTGGAGGAGGAACCACACAATCAAAGCACACCCAAGCGCAGGAAAACAGAGAAAAAAGAACAAAGTTCCCCTGTGACAGAGAAGAAGAAGAAGAATTCCCCTGCAAAACGACTCACTCCAAGGAAGAGTAACTCCAAGAATAGCACGCCTAAGAAAAATGGATCGGTTGCCAATTCACCCAATTCTGCATGGAAGTTCGACTTGAAGTTAGAGGCAAAATTATCGGCTGAGGAAGATTCTAGGGTGTATGCAGGACTGAAAATACATCCGTTTTTTTCATTGTGGAAGGTAGAGAAGAAAAATCAGGAGGAGGAATGTAGTTTAATCCCTACTAAGAGGGAAGGGAGAGGAGTTACATGTGATTCTATTCATGTATTTGAAAATGTTCAGGATGATGTTTCACCCCTTGACTGGAGTGGTTGGACATTTTTGAATGATACCACCACTGCGGAGTTTGGTCCAACAAGTTTAAATTTATGTTTTGTTGAATCCTTAAATTTTGATAACTTTCCTGATGCTTTAAAATCCTCAAGCACTTCAATTTCTCAGAATGTCATGTCTTGCTCAGATCAACTTTTTAAACAGTCAGATAATATGCTGGAAATATCACTAACAAATTCAGCTGGCCTAGCTAATGAGCGAGCAATATGTCCATCAAAGCTAGAAGGTGTCAAGGACCTGGACTTGGAGGGGAATGAAATCAATACTTTTTCAGGACATAAGAACATTTTCAGAAAGTCAGATACTGAGCCACAAAGTAAATTTCTTCAAGAAAGTATGAGGTCTTACTACCATAGTTGTGAAAGTAAAGCTAAGAGCAGTTTATGGATACATAAATACAAACCAACAAAAGCTTTTGAGGTGTGTGGTAACGAAGAGGCTGTGAATTTCTTGCGTGACTGGTTACACCTTTGGCATAAAAGACGTTATGAATGCAGCAAAAAGGATTCGTCTAATAGGGATAGTCAAAGGCAAGATGATGACAATCATATCTATTCTGACAGTGACCATGCTTCAGAAGTTATTGATGAGAAGGATTCCCTACAGAATGTTCTTCTGATTACAGGACCAATTGGGAGCGGCAAGTCTGCAGCTGTTTATGCTTGTGCCCAAGAGCAAGGGTTTGAGATTTTAGAGATCAATACATCAGATTGTCGAAAGGGGGCTGCTGTCAAGCAAAATCTTGGAGAGGCTCTTAAATCACATGCGGTGAAAAGTTTACTGGATCAAACTCTAAGTTCACATAAGAAAAATGAGCAGTTGCTTCCGGCTCCTGCTTTACCTAATGGTATAGCAGTTGAGGAGACAGATGATGGGATGATTGAACCGATAATCATTTCCGATGATGAAGCCCATAGTCCTGGTGGAACATCTCCAAGGTTACATGGAAAATGTGATGTACTTACAAGCGATAGTGTCCAGAGTTTAATTCTATTTGAGGATGTGGACATCCTTTTTCCTGAGGATAGCGGATGTATAGCTGCCATACGACACATTTCTGAGACAGCAAAAGGGCCAATTATATTGACCACCAATAGTAATAATGCTGGCCTACCAGTTAGTTTCGCAAGACTACATATTTCTTTTTCATTGCCATTGCCAGATGAGTTGCTTTGTCATATGTACATGGTTTGTGTCATGGAAGAAGTCAACATCAATCCTCCTTTACTGAAAAAGTTTGTCCAGTCGTGTGGTGGAGATATTCGTAAAACCATTATGCAACTTCAGTTCTGGTTCCAGAGTAAAAAATACAGCAAAGACAGGAAAGCGCGGAAGGTGTACGGCTCACTTTCTTTTGATCTCGAGGCTTGTCATCAGATAGTACCAAAGATACTACCCTGGAATTATCCCTCGGATTTATCCAATCTAATTGAGAAGGAAGTTGCTAGGTCAATAACCATAATGGAGGAAAACTCATGCTTGCAGGAGTTAGTTAATAAAGATCTAGACATAAATGAAGGGAAAAATGATTTAGATGAGCCATGTATGAAGACTGGTTATTCAGAGACCAAGGTAGAGAGGATCAAGAGATCTCCTGCATGCAGTGAGTTTGAAAGTCAATATAATGCTGTTTATGGGCTTTCAAATTGTTCTGGATTCCCAATAACATCTTCTGGGAAAAAGGATCAAAGTAAAGTCATGGTGATGGCCTCTGATTGTAAGGTGATGGATCCAAATAATGGACATACTCAAGATGTTCATGATGACTCTTACAAGAGACATTCCCATGAAAGCAACAGTCAAATTCCCTGTAAGTTTGAATTGAATCAAACCTACCCCAGCACATTATTTAAAAAACTGGTTTGTTCTAGTTTGGAAGATTCAGAGGAAGAATGGTATAAGTATAGTGATGCATGCTTAAATGAAACACATAAATCATTTGATATACCCTGTTTTCCAGGATCAACATTCGTTCCTGAGACAGCAATTCAAAATGGAATGAAGTCCATGTCTGGACCAGTTTTTGGTTGTCATGCTGGTCCACTAGAAGTTCCTCTGAATAATGAGCAAACACCGTTCACTCTTGGTGTTTGTCAGTCCTCATACAAATTGCCACAAAATTCTTATTTATTGGAAAATACTGAAATTCATATACCTTCTCTGAAAACAGCTGTGCAAGATTTCAGAGATGAGAACTTGGAAACCACAGCTGTGTGTAATGTGATGGATGATTGTGGTCATGCTGATTCTAAATTGAAGTCAAAGATTGTTGAGTCCAGTCCATCTATGGCAACGGATATGGTACAAAATTTGTGGAGGGAACTTCGTGTTTGTCAAAAGGATTTAGGACAGCATGCCAACCCAGAACAGCAGGGTGTTGTTGAAGTTGTTAAACTTACTAGTGGGCTGACCAATCTAATTTCTGAAGCTGACTTACTGTTTCGTAATCACCAACAAAATCAAAATGGTATCATGGAGCCTCCAATGTCCCTTCATGATGAAGTCACGTTTAGTTGGTATGATGAGCAGATGATGATGTCTACTATTGCTGAACATGGTTTTTGTTTATATGCCAAACACATATCAGATGTGGGATCTAAGTTCGGTTGTAAGAACGAGGTAGATCTAACTTCAGAGATGTTGGATTGCACTACTAATGTTATGGCACTGGGAAAATTATCTAGACAGGACTACACAAAAAGCACAGGTATCCATGCCAAAAAGCAATTAGAGATGAACAACCCAACAAATGATATGAAGAGAAAATCTTTGTCCAAGGTGATACAGTCTATTACACCTGCGAGATCATCATTGGCAATGAAAGGTCTTGCATTCAATGAATATATATCTTCACTGCGCCAAATTTCAATTTCGGAAGGTTCCCGTATTTCACATGGTTCTGGAAAGATGAGAAAAGGAAGGCGAGGTGCTCTACATTATTTGAGCAGAGGTTCAATGATGTCTCCAGAAGATATATTATTGGTGTGTGAAGGTGATTTATACAGAAAGATATCTTCGGAATGTACAGCTAACATGGAAAGCAATGGTACATGA 3495 0.3928 MEEEPHNQSTPKRRKTEKKEQSSPVTEKKKKNSPAKRLTPRKSNSKNSTPKKNGSVANSPNSAWKFDLKLEAKLSAEEDSRVYAGLKIHPFFSLWKVEKKNQEEECSLIPTKREGRGVTCDSIHVFENVQDDVSPLDWSGWTFLNDTTTAEFGPTSLNLCFVESLNFDNFPDALKSSSTSISQNVMSCSDQLFKQSDNMLEISLTNSAGLANERAICPSKLEGVKDLDLEGNEINTFSGHKNIFRKSDTEPQSKFLQESMRSYYHSCESKAKSSLWIHKYKPTKAFEVCGNEEAVNFLRDWLHLWHKRRYECSKKDSSNRDSQRQDDDNHIYSDSDHASEVIDEKDSLQNVLLITGPIGSGKSAAVYACAQEQGFEILEINTSDCRKGAAVKQNLGEALKSHAVKSLLDQTLSSHKKNEQLLPAPALPNGIAVEETDDGMIEPIIISDDEAHSPGGTSPRLHGKCDVLTSDSVQSLILFEDVDILFPEDSGCIAAIRHISETAKGPIILTTNSNNAGLPVSFARLHISFSLPLPDELLCHMYMVCVMEEVNINPPLLKKFVQSCGGDIRKTIMQLQFWFQSKKYSKDRKARKVYGSLSFDLEACHQIVPKILPWNYPSDLSNLIEKEVARSITIMEENSCLQELVNKDLDINEGKNDLDEPCMKTGYSETKVERIKRSPACSEFESQYNAVYGLSNCSGFPITSSGKKDQSKVMVMASDCKVMDPNNGHTQDVHDDSYKRHSHESNSQIPCKFELNQTYPSTLFKKLVCSSLEDSEEEWYKYSDACLNETHKSFDIPCFPGSTFVPETAIQNGMKSMSGPVFGCHAGPLEVPLNNEQTPFTLGVCQSSYKLPQNSYLLENTEIHIPSLKTAVQDFRDENLETTAVCNVMDDCGHADSKLKSKIVESSPSMATDMVQNLWRELRVCQKDLGQHANPEQQGVVEVVKLTSGLTNLISEADLLFRNHQQNQNGIMEPPMSLHDEVTFSWYDEQMMMSTIAEHGFCLYAKHISDVGSKFGCKNEVDLTSEMLDCTTNVMALGKLSRQDYTKSTGIHAKKQLEMNNPTNDMKRKSLSKVIQSITPARSSLAMKGLAFNEYISSLRQISISEGSRISHGSGKMRKGRRGALHYLSRGSMMSPEDILLVCEGDLYRKISSECTANMESNGT 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00973 1164 CDD AAA 352 384 - -
Cca05g00973 1164 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 5 1160 - -
Cca05g00973 1164 MobiDBLite consensus disorder prediction 315 334 - -
Cca05g00973 1164 MobiDBLite consensus disorder prediction 38 61 - -
Cca05g00973 1164 Gene3D - 532 595 - -
Cca05g00973 1164 MobiDBLite consensus disorder prediction 1 33 - -
Cca05g00973 1164 Gene3D - 273 528 IPR027417 -
Cca05g00973 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 581 IPR027417 -
Cca05g00973 1164 MobiDBLite consensus disorder prediction 1 61 - -
Cca05g00973 1164 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 5 1160 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00973 Cca-Chr5 25656956 25667337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00973 276 577 Core DNA Replication Machinery Family AT5G22010 20.588 9.49e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00973 - - gmx:100815984 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00973 05 25656956 25667337 Cca05g00973 05 25656956 25667337 ECH