Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00964 ATGGCAGGAGGAGCTATTTCTTGGAAGAGTGTTAAACAGACTCTTACAGCTACTTCTACCATGGAAGCAGAGTATGTCGCTTGTTATGAGGCTACTTGTCAAGCTGTGTGGCTTAAAAATTTGATTTCTGGCTTTCATGTTGTTGAAAGTATTTCTAGGCCACTTGTGATATATTGCGACAATACTGCTGCTGTGCATTTCTCTCAAAACAATAGAAGTTCTACTCGCTCAAAGCATTTTGATATAAAATTTCTATTTGTTAGAGAGAAAGTTTTGGATTCTCAGACTCGAATTGAGTATATTGCTACAGAAAATATGTTAGCAGATCCAATGACTAAAGGCTTAGCTATTGGAATTTTTCAAAATCATAGCTCTGAGGGGAAGTGCAACGACAAAGTTGTGAAAGAAGTGGTGAGCCAAATAAGAGATGTGGCCCACAACGCTGAGGATGTGGTTGACACCTACATCACCAATGTCACCAAACACAGAACCAGAAACATGCTGAGCAAGTTATTCCACTTCAAAGAACGATTCATGGTACTTCACAAAGTCAATGCTGAGATAGAGAGGATCAGGAGTCACATTGATGAGATTTACAAGAACAAAGAGAGATATGGCATTGGAGAAGGCGAGTTCCCAAGCGAAGAAGCTGAGTCACTCCGCAAAAGGAGGAGGGATGTGGAGGAAGAAGATGTGGTGGGCTTAGTGCATGACTCCAGCGTTGTGATCAAACAACTCACGGTGAGTGATTCATGTAGTGAAGTTGTTTCCATAATTGGGATGGGTGGGTTGGGGAAAACCACTCTTGCTCGAAAGATCTATAACAAGAGTGAAGTGAAGGAGTTGTTTACTTGTCGTGCATGGGGTTATGTGTCCAATGATTATAGAGCGAGGGAGCTTCTGTTAAGCCTTCTCAAGTGTTTGCTATCCACGTCTGAATATAATGATTTATTCAAGAAAGCAACAGATGAAGTTGGAGATTTGAGTGAGGGAGAGTTAAGGATGAAAGTGGCAGAATGCTTGAAGGGAAAGAAATACTTGGTAGTGCTTGATGACATTTGGAAAACCCAAGTTTGGGATGAGGTAAAAACTGCCTTTCCAGATGACAAAAACGGTAGCATAATACTGATAACAAGTCGTATAAATGAGGTGGCACACTATATAGGAACAACGCCCCCCTACTACCTTCCCTTCCTTAGTAAAGATGAAAGTTGGGAACTCTTCTCTAAGAAGGTGTTTCGTGGCAAACAATGCCCTTCTAATCTACTTCCTCTGGGTAGAACCATTGTCGAAAGCTGTGGGGGTTTACCACTTGCCATAGTTGTTTTGGCAGGACTTGTTGCCAAGAAAGAGAAGTCAGAAAGAGAGTGGAAGAGAATCAAGGAAGTGAGTTGGCATCTTACACAGGACAAGACTGAAGTGATGGATATACTGAAGCTCAGCTACGACAACTTGCCTCAAAGGTTAAAGCCATGCTTTCTGTATTTTGGAATCTATCCTGAAGACTATGAGATCAGTGCAAGGCAATTGATCCAACTATGGACAGCTGAAGGGTTTATACAAACACAAGAAATTGGAATCCCGAGTTCAGTAGAGCTAGAAGACATTGGTGACTACTACTTGGATGAGCTGGTGGATCGCAGCCTTGTGCAAGTGGCAAGCAGAAGGAGTGATGGCGGCGTCAAGACGTGTCGGATTCATGATCTTGTTCGTGACCTTTGCATATTAGAGAGCAAATCCAATAAGTTTTTGGAGGTTTGCACTGAGGTAAATGTTGATACTCTATCCTTGAGAAATCCACGTAGGTTGTCCTTGCAATGCAAAGCACGGTCTAGTATCTGTACAAAAAAATTTAATCAATCGTACACTCGTTCCTTGTTCTTCTTTTCTGAAACTTTGCACACACGGGGTATTCCAAAGAGCATCAAGAATGCTCGTGTGGTTTACTCAAAATCCAAAGGAGCAATGAGTTATTCATTACATAGTACTTTTAATACAATGATCCATCTGAGGTATTTGAGAATAGACACAGGTGTCAGCCACATTCCAGCTTCTATAGGAAACCTTAGGAATTTAGAAACGCTAGATATAAGATACAAAGAGACTGTCTCCAGTGAAATTTGGAAGCTGAAGCGACTGAGACATCTTTATTTGAGAGGGGGTGCAAAGTTACCAGAAGTAGATAGAGAAAAAAAGGTGAATCTTCAAACTCTTTGGTTAAGGGCTTTTGATCGACAAATGGTGACCATGTTGAACAAGGACATGTTTTTCAATGAGATATTTCCCAGGTTGAGAAAAGTAGTTTTGCACTATCCATTTCATCGTCCTTCACATGAACAATTACCGATTGTAAGGTTACCAAGCTTGCACCACCTAAGCAATCTCCATAGCCTAAAAATAATTGACTTTCTAGAACTTCCACAAGATGCAAATGCCTTTCCATCACATCTCACCAAGATAACATGGAAACAAATACATGTCAGCAATGACTTCTCTTTGATGAATACTCTAGGATGGCTTCCCAACCTGCAAATTTTGAAAATGGGAAGGCAATGCTCTCAAGTCTTGTTCGACCTCAATGTTGGCGGAGGAGAGTTCCCTCAGCTTCAAGTATTTCAAATGAGGGGAATGAAAGTCAGAAGGTGGAAATTAGACAAAAGTGCAATGCCATATCTTCAACATCTTCTCATTGAAAGCTGTGAATATTTGAATGATCTTCCCGAAGAACTCTGGAACTTGAATACCTTAAGAGAAGTGCATGCTTTGTGGCCCTCTGAAAGATTGGCGCACATACTCCAAAATGTGAAGTTAAAGAATGCTTGTAAGCTCATAATCTCTCATGCTCCTCCAAGTGGTCAATCGGATCAGATTTCACTGACAGATTCTTTCTCAGTTGATAGTTGA 2904 0.4098 MAGGAISWKSVKQTLTATSTMEAEYVACYEATCQAVWLKNLISGFHVVESISRPLVIYCDNTAAVHFSQNNRSSTRSKHFDIKFLFVREKVLDSQTRIEYIATENMLADPMTKGLAIGIFQNHSSEGKCNDKVVKEVVSQIRDVAHNAEDVVDTYITNVTKHRTRNMLSKLFHFKERFMVLHKVNAEIERIRSHIDEIYKNKERYGIGEGEFPSEEAESLRKRRRDVEEEDVVGLVHDSSVVIKQLTVSDSCSEVVSIIGMGGLGKTTLARKIYNKSEVKELFTCRAWGYVSNDYRARELLLSLLKCLLSTSEYNDLFKKATDEVGDLSEGELRMKVAECLKGKKYLVVLDDIWKTQVWDEVKTAFPDDKNGSIILITSRINEVAHYIGTTPPYYLPFLSKDESWELFSKKVFRGKQCPSNLLPLGRTIVESCGGLPLAIVVLAGLVAKKEKSEREWKRIKEVSWHLTQDKTEVMDILKLSYDNLPQRLKPCFLYFGIYPEDYEISARQLIQLWTAEGFIQTQEIGIPSSVELEDIGDYYLDELVDRSLVQVASRRSDGGVKTCRIHDLVRDLCILESKSNKFLEVCTEVNVDTLSLRNPRRLSLQCKARSSICTKKFNQSYTRSLFFFSETLHTRGIPKSIKNARVVYSKSKGAMSYSLHSTFNTMIHLRYLRIDTGVSHIPASIGNLRNLETLDIRYKETVSSEIWKLKRLRHLYLRGGAKLPEVDREKKVNLQTLWLRAFDRQMVTMLNKDMFFNEIFPRLRKVVLHYPFHRPSHEQLPIVRLPSLHHLSNLHSLKIIDFLELPQDANAFPSHLTKITWKQIHVSNDFSLMNTLGWLPNLQILKMGRQCSQVLFDLNVGGGEFPQLQVFQMRGMKVRRWKLDKSAMPYLQHLLIESCEYLNDLPEELWNLNTLREVHALWPSERLAHILQNVKLKNACKLIISHAPPSGQSDQISLTDSFSVDS 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00964 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 496 IPR027417 -
Cca05g00964 967 Gene3D Ribonuclease Inhibitor 574 957 IPR032675 -
Cca05g00964 967 CDD RNase_HI_RT_Ty1 1 115 - -
Cca05g00964 967 SUPERFAMILY L domain-like 556 917 - -
Cca05g00964 967 Gene3D - 487 573 IPR036388 -
Cca05g00964 967 PRINTS Disease resistance protein signature 255 270 - -
Cca05g00964 967 PRINTS Disease resistance protein signature 340 354 - -
Cca05g00964 967 PRINTS Disease resistance protein signature 433 447 - -
Cca05g00964 967 PRINTS Disease resistance protein signature 687 703 - -
Cca05g00964 967 Pfam NB-ARC domain 242 484 IPR002182 GO:0043531
Cca05g00964 967 Gene3D - 117 204 - -
Cca05g00964 967 Gene3D - 398 486 IPR042197 -
Cca05g00964 967 Gene3D - 220 391 IPR027417 -
Cca05g00964 967 CDD RX-CC_like 131 198 IPR038005 -
Cca05g00964 967 PANTHER - 128 945 - -
Cca05g00964 967 PANTHER DISEASE RESISTANCE PROTEIN RP 128 945 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00964 Cca-Chr5 25512027 25515719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00964 256 675 WRKY Transcription Factor Family AT5G45050 23.059 5.33e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00964 - - ccaj:109800041 1913.66