Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00963 ATGGCTACCAACACACTGATGAGTTCTGCTGTCACAGCCTTCCCTTCTCTTCTCTCTTCCTCAAAGTCCAAGTTTGCCACTGCAATTCCTCTTTCAAGCTTTGCCACCAATGCCTCTTCTCGCTTTACCATGACTTCTGACTGGATGCCAGGCCAGCCTAGACCCCCTTACCTTGATGGTTCAGCACCTGGTGACTTTGGATTTGACCCTCTCCGTCTTGGTGAAGTTCCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCAGAAGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGCAACCCTGTTCCATGGGGCACCCTTCCCACCATTCTGGTCATTGAATTCCTTTCTATTGCCTTTGTGGAGCACCAAAGGAGCATGGAGAAAGACCCAGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGCTACTCCAAGGACCCTAAAACATTCCACGAATACAAAGTCAAGGAAATTAAGAATGGACGTCTTGCCCTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCAGGCACTGGACCTTTGGAGAACTTGGCTACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTCATTATTCCCCAATCGATTTTGCCTTGA 735 0.4844 MATNTLMSSAVTAFPSLLSSSKSKFATAIPLSSFATNASSRFTMTSDWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVIIPQSILP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00963 244 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Cca05g00963 244 SUPERFAMILY Chlorophyll a-b binding protein 38 238 - -
Cca05g00963 244 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
Cca05g00963 244 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 234 IPR001344 GO:0009765|GO:0016020
Cca05g00963 244 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 19 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00963 Cca-Chr5 25467136 25470611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00963 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 80.808 4.26e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00963 K08907 - gmx:100800350 465.692