Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00960 ATGACACAAATTTGGACCTTATGGCAATGGGAAGATCTAAAGTTGGATTTTGAGATGTTGGGATGGACAAAGGGGGTACATGGGGATTATGCATACACTATTCGAAGGAATGGCCAAGGTGTAAATGAATTTCATTTGATGAGTTCTATTGATATCCCATTAGATGCTCAACCAAGTCTTATACCACTTGATGGGGAGATGGAAAGATCCAGTTGCCACCAGCTTAGTTTGAAGAACATGGCTGAATCACTAAAATCACTAGGTAACAAGGCTATGCAATCTAAGAAATACTCTGATGCAATTGACTTGTATAATGCTGCCATTGCACTCTATGAAAAGAGTGCTGTCTACTACTGCAACAGAGCAGCTGCTTACACTCAGATTAACAAATATACAGAAGCAATCCAAGATTGTATTAGATCTATCGAGATCGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTATGGCTTATTATGCACAAGGAAATTACAGAGACGCTATTGAATTAGGATTTAGAAAAGCTTTGCAGTTGGATCCAAATAATGAGACTGTCAAAGAAAATATACGGGTAGCCGAGGGTAAGTTGTCAGAAGAGATACACCATGCATATCAGCATCACAACCAGAATCCAAGACCATCTCAAGAATTTCCAAACCTATCTGCACGAGGATCAAGAAGCCAAGCAGCACCACCTCCATTTTCCTCTGTGCCATTTAACCCGAATGATCTTGCAAACATGTTCATGAACATAGCCGGGAACGCTACGCAGCAGGGGTCACATTCTGTGGAAAGGCAAGAAGATACCAATAATAGTGGTGGAGCTAGTGAACCTGAAATAAGGATTGGGGGCAATATTAGTGTAAACCTTGACCAAATGCCTGAGAATCTAACAGGGGCCTTCCAATCTATGATGGAAATGTTATCTGGGTCTGGGGTTGTACCCCCTGGACAACCACAAGATCATATGAATGGAAGAAATAGAACAGCACCAAACTAG 1002 0.4162 MTQIWTLWQWEDLKLDFEMLGWTKGVHGDYAYTIRRNGQGVNEFHLMSSIDIPLDAQPSLIPLDGEMERSSCHQLSLKNMAESLKSLGNKAMQSKKYSDAIDLYNAAIALYEKSAVYYCNRAAAYTQINKYTEAIQDCIRSIEIDPNYSKAYSRLGMAYYAQGNYRDAIELGFRKALQLDPNNETVKENIRVAEGKLSEEIHHAYQHHNQNPRPSQEFPNLSARGSRSQAAPPPFSSVPFNPNDLANMFMNIAGNATQQGSHSVERQEDTNNSGGASEPEIRIGGNISVNLDQMPENLTGAFQSMMEMLSGSGVVPPGQPQDHMNGRNRTAPN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00960 333 Pfam Tetratricopeptide repeat 115 148 IPR001440 GO:0005515
Cca05g00960 333 Pfam Tetratricopeptide repeat 150 183 IPR001440 GO:0005515
Cca05g00960 333 MobiDBLite consensus disorder prediction 207 239 - -
Cca05g00960 333 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Cca05g00960 333 PANTHER LD24721P 66 326 - -
Cca05g00960 333 Gene3D Tetratricopeptide repeat domain 75 232 IPR011990 GO:0005515
Cca05g00960 333 SMART tpr_5 149 183 IPR019734 GO:0005515
Cca05g00960 333 SMART tpr_5 115 148 IPR019734 GO:0005515
Cca05g00960 333 SMART tpr_5 81 114 IPR019734 GO:0005515
Cca05g00960 333 MobiDBLite consensus disorder prediction 257 277 - -
Cca05g00960 333 MobiDBLite consensus disorder prediction 257 282 - -
Cca05g00960 333 SUPERFAMILY TPR-like 80 193 IPR011990 GO:0005515
Cca05g00960 333 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Cca05g00960 333 MobiDBLite consensus disorder prediction 310 333 - -
Cca05g00960 333 PANTHER LD24721P 66 326 - -
Cca05g00960 333 MobiDBLite consensus disorder prediction 208 239 - -
Cca05g00960 333 ProSiteProfiles TPR repeat profile. 149 183 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00960 Cca-Chr5 25362155 25366547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00960 80 179 U-box Gene Family AT3G07370 32.000 3.65e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00960 K16365 - gmx:100775346 398.667